recipe xs-sim

Simulates NGS reads

Homepage:

https://github.com/pratas/xs

License:

GPL-2.0

Recipe:

/xs-sim/meta.yaml

XS is a skilled FASTQ read simulation tool, flexible, portable (does not need a reference sequence) and tunable in terms of sequence complexity

package xs-sim

(downloads) docker_xs-sim

versions:

2-2,  2-1,  2-0,  1.0.0-2,  1.0.0-1,  1.0.0-0

depends libgcc-ng:

>=12

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install xs-sim

and update with::

   mamba update xs-sim

To create a new environment, run:

mamba create --name myenvname xs-sim

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/xs-sim:<tag>

(see `xs-sim/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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