recipe xyalign

Command line tools and python library to infer ploidy, correct for sex chromosome complement, and work with NGS data

Homepage

https://github.com/WilsonSayresLab/XYalign

License

GPL / GPL-3.0

Recipe

/xyalign/meta.yaml

package xyalign

(downloads) docker_xyalign

Versions

1.1.5-0, 1.1.4-2, 1.1.4-0, 1.1.3-0, 1.0.0-0

Depends bbmap

Depends bedtools

Depends bwa

Depends matplotlib

Depends numpy

Depends pandas

Depends platypus-variant

Depends pybedtools

Depends pysam

Depends python

<3

Depends sambamba

Depends samtools

Depends scipy

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install xyalign

and update with:

conda update xyalign

or use the docker container:

docker pull quay.io/biocontainers/xyalign:<tag>

(see xyalign/tags for valid values for <tag>)