recipe xyalign

Command line tools and python library to infer ploidy, correct for sex chromosome complement, and work with NGS data

Homepage:

https://github.com/WilsonSayresLab/XYalign

License:

GPL / GPL-3.0

Recipe:

/xyalign/meta.yaml

package xyalign

Versions:

1.1.5-1,  1.1.5-0,  1.1.4-2,  1.1.4-0,  1.1.3-0,  1.0.0-0

Depends:

• bbmap

• bedtools

• bwa

• matplotlib-base

• numpy

• pandas

• platypus-variant

• pybedtools

• pysam

• python <3

• sambamba

• samtools

• scipy

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install xyalign

and update with:

conda update xyalign

or use the docker container:

docker pull quay.io/biocontainers/xyalign:<tag>

(see xyalign/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/xyalign/README.html)