recipe xyalign

Command line tools and python library to infer ploidy, correct for sex chromosome complement, and work with NGS data



GPL / GPL-3.0



package xyalign

(downloads) docker_xyalign



depends bbmap:

depends bedtools:

depends bwa:

depends matplotlib-base:

depends numpy:

depends pandas:

depends platypus-variant:

depends pybedtools:

depends pysam:

depends python:


depends sambamba:

depends samtools:

depends scipy:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install xyalign

and update with::

   mamba update xyalign

To create a new environment, run:

mamba create --name myenvname xyalign

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `xyalign/tags`_ for valid values for ``<tag>``)

Download stats