- recipe yacht
YACHT is a mathematically rigorous hypothesis test for the presence or absence of organisms in a metagenomic sample, based on average nucleotide identity (ANI).
- Homepage:
- Documentation:
- License:
MIT / MIT
- Recipe:
- Links:
- package yacht¶
- versions:
1.3.0-0,1.2.3-0,1.2.2-0,1.2.1-0,1.1.0-0,1.0-0- depends biom-format:
- depends codecov:
- depends libgcc:
>=12- depends libstdcxx:
>=12- depends loguru:
- depends maturin:
>=1,<2- depends numpy:
>=1.21,<3- depends numpy:
>=1.22.4- depends openpyxl:
- depends pandas:
- depends pytaxonkit:
>=0.9.1,<0.10.0a0- depends pytest:
- depends pytest-cov:
- depends python:
>=3.11,<3.12.0a0- depends python_abi:
3.11.* *_cp311- depends requests:
- depends ruff:
- depends scikit-learn:
- depends scipy:
- depends sourmash:
>=4.8.11,<5.0a0- depends sourmash:
>=4.8.3,<5- depends sourmash_plugin_branchwater:
- depends tqdm:
- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install yacht and update with:: mamba update yacht
To create a new environment, run:
mamba create --name myenvname yacht
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/yacht:<tag> (see `yacht/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/yacht/README.html)
