recipe yahmm

YAHMM is a HMM package for Python, implemented in Cython for speed.

Homepage:

http://pypi.python.org/pypi/yahmm/

License:

MIT

Recipe:

/yahmm/meta.yaml

package yahmm

versions:

1.1.3-9,  1.1.3-8,  1.1.3-7,  1.1.3-6,  1.1.3-5,  1.1.3-4,  1.1.3-3,  1.1.3-1,  1.1.3-0

depends cython:

>=0.20.1

depends libgcc-ng:

>=12

depends matplotlib-base:

>=1.3.1

depends networkx:

>=1.8.1

depends numpy:

>=1.24.3,<2.0a0

depends numpy:

>=1.8.0

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends scipy:

>=0.13.3

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install yahmm

and update with::

   mamba update yahmm

To create a new environment, run:

mamba create --name myenvname yahmm

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/yahmm:<tag>

(see `yahmm/tags`_ for valid values for ``<tag>``)

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