recipe yanagiba

Filter short or low quality Oxford Nanopore reads which have been basecalled with Albacore.

Homepage:

https://github.com/Adamtaranto/Yanagiba

License:

MIT / MIT License

Recipe:

/yanagiba/meta.yaml

package yanagiba

(downloads) docker_yanagiba

versions:

1.0.0-2,  1.0.0-1,  1.0.0-0,  0.1.0-0

depends biopython:

>=1.70

depends nanomath:

>=0.13.0

depends pandas:

>=0.20.3

depends python:

>=3

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install yanagiba

and update with::

   mamba update yanagiba

To create a new environment, run:

mamba create --name myenvname yanagiba

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/yanagiba:<tag>

(see `yanagiba/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/yanagiba/README.html)