- recipe zarp
User-friendly command-line interface for the ZARP RNA-Seq analysis pipeline
- Homepage:
- Documentation:
- Developer docs:
- License:
APACHE / Apache License 2.0
- Recipe:
- package zarp¶
- versions:
1.0.0-0,0.1.1-0- depends addict:
>=2.4.0- depends bidict:
>=0.22.0- depends email-validator:
>=1.2.1- depends genomepy:
>=0.15.0- depends jsonref:
>=0.2- depends numpy:
>=1.22,<1.25- depends pandas:
>=1.3.5,<1.4.0- depends pydantic:
>=1.9.2,<2.0.0- depends pygments:
>=2.8.0- depends python:
>=3.9,<=3.10- depends rich:
>=12.5.1- depends snakemake:
>=7.19.1- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install zarp and update with:: mamba update zarp
To create a new environment, run:
mamba create --name myenvname zarp
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/zarp:<tag> (see `zarp/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/zarp/README.html)
