recipe zga

Prokaryotic genome assembly and annotation pipeline

Homepage

https://github.com/laxeye/zga

Developer docs

https://github.com/laxeye/zga/

License

BSD / BSD

Recipe

/zga/meta.yaml

package zga

Versions

0.0.9.post2-0,  0.0.9-0,  0.0.8-0,  0.0.7-0

Depends

• bbmap

• biopython <=1.77

• blast

• checkm-genome >=1.1.0

• dfast >=1.2.12

• fastp

• flye >=2.6

• mash >=2

• nxtrim

• python >=3.6

• racon

• samtools >=1.9

• spades >=3.12

• unicycler

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install zga

and update with:

conda update zga

or use the docker container:

docker pull quay.io/biocontainers/zga:<tag>

(see zga/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/zga/README.html)