recipe advntr

A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data

Homepage:

https://github.com/mehrdadbakhtiari/adVNTR

License:

BSD 3-Clause

Recipe:

/advntr/meta.yaml

package advntr

Versions:

1.5.0-0,  1.4.1-2,  1.4.1-1,  1.4.1-0,  1.4.0-2,  1.4.0-1,  1.4.0-0,  1.3.3-2,  1.3.3-1, 

1.5.0-0,  1.4.1-2,  1.4.1-1,  1.4.1-0,  1.4.0-2,  1.4.0-1,  1.4.0-0,  1.3.3-2,  1.3.3-1,  1.3.3-0,  1.3.2-1,  1.3.2-0,  1.3.1-0,  1.3.0-1,  1.2.0-0,  1.1.1-1,  1.1.1-0,  1.1.0-1,  1.1.0-0,  1.0.3-0

Depends:

• biopython

• cython

• htslib 1.9.*

• joblib

• keras 2.2.4.*

• libgcc-ng >=12

• libstdcxx-ng >=12

• matplotlib-base

• muscle 3.8.1551.*

• networkx 1.11.*

• numpy >=1.16.5,<2.0a0

• pysam 0.15.1.*

• python >=2.7,<2.8.0a0

• python_abi 2.7.* *_cp27mu

• scikit-learn

• scipy >=1.2.1,<2.0a0

• tensorflow 1.13.1.*

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install advntr

and update with:

conda update advntr

or use the docker container:

docker pull quay.io/biocontainers/advntr:<tag>

(see advntr/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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