recipe anise_basil

BASIL is a method to detect breakpoints for structural variants (including insertion breakpoints) from aligned paired HTS reads in BAM format. ANISE is a method for the assembly of large insertions from paired reads in BAM format and a list candidate insert breakpoints as generated by BASIL.

Homepage

https://github.com/seqan/anise_basil

License

BSD

Recipe

/anise_basil/meta.yaml

Links

doi: 10.1093/bioinformatics/btv051

package anise_basil

(downloads) docker_anise_basil

Versions

1.2.0-0

Depends
  • libgcc-ng >=4.9

  • libstdcxx-ng >=4.9

  • python >=2.7,<2.8.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install anise_basil

and update with:

conda update anise_basil

or use the docker container:

docker pull quay.io/biocontainers/anise_basil:<tag>

(see anise_basil/tags for valid values for <tag>)