recipe antismash

antiSMASH allows the rapid genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters.

Homepage

http://antismash.secondarymetabolites.org/

License

AGPL-3.0-or-later

Recipe

/antismash/meta.yaml

Links

biotools: antismash

package antismash

Versions

4.1.0-1, 4.1.0-0, 4.0.2-3, 4.0.2-2, 4.0.2-1, 4.0.1-1

Depends

• argparse

• backports.lzma

• bcbiogff

• biopython >=1.65

• blast ==2.2.31

• clustalw

• cssselect

• diamond ==0.8.36

• ete2

• fasttree ==2.1.9

• glimmer ==3.02

• glimmerhmm ==3.0.4

• helperlibs

• hmmer

• hmmer2

• libxml2 ==2.9.4

• mafft

• matplotlib

• meme ==4.11.2

• muscle

• networkx

• numpy

• openjdk

• pandas

• perl-bioperl

• perl-pathtools

• prodigal

• pyexcelerator

• pyquery ==1.2.9

• pysvg

• python 2.7*

• scikit-learn ==0.18.2

• scipy

• xz ==5.2.2

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install antismash

and update with:

conda update antismash

or use the docker container:

docker pull quay.io/biocontainers/antismash:<tag>

(see antismash/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/antismash/README.html)