recipe antismash

antiSMASH allows the rapid genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters.

Homepage

http://antismash.secondarymetabolites.org/

License

AGPL / AGPL-3.0

Recipe

/antismash/meta.yaml

Links

biotools: antismash

package antismash

Versions

4.2.0-1, 4.1.0-1, 4.1.0-0, 4.0.2-3, 4.0.2-2, 4.0.2-1, 4.0.1-1

Depends

• argparse

• backports.lzma

• bcbio-gff

• biopython >=1.65

• blast 2.2.*

• clustalw

• cssselect

• diamond 0.8.*

• ete2

• fasttree 2.1.*

• glimmer 3.02

• glimmerhmm 3.0.*

• helperlibs

• hmmer 3.1b2

• hmmer2

• icu >=58.2,<59.0a0

• libxml2 2.9.*

• mafft

• matplotlib

• meme 4.11.2

• muscle

• networkx

• numpy

• openjdk

• pandas

• perl 5.26.*

• perl-bioperl

• prodigal

• pyexcelerator

• pyquery 1.2.*

• pysvg

• python >=2.7,<2.8.0a0

• scikit-learn 0.18.*

• scipy

• xz 5.2.*

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install antismash

and update with:

conda update antismash

or use the docker container:

docker pull quay.io/biocontainers/antismash:<tag>

(see antismash/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/antismash/README.html)