recipe antismash

antiSMASH allows the rapid genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters.

Homepage

http://antismash.secondarymetabolites.org/

License

AGPL / AGPL-3.0

Recipe

/antismash/meta.yaml

Links

biotools: antismash

package antismash

(downloads) docker_antismash

Versions

4.2.0-1, 4.1.0-1, 4.1.0-0, 4.0.2-3, 4.0.2-2, 4.0.2-1, 4.0.1-1

Depends argparse

Depends backports.lzma

Depends bcbio-gff

Depends biopython

>=1.65

Depends blast

2.2.*

Depends clustalw

Depends cssselect

Depends diamond

0.8.*

Depends ete2

Depends fasttree

2.1.*

Depends glimmer

3.02

Depends glimmerhmm

3.0.*

Depends helperlibs

Depends hmmer

3.1b2

Depends hmmer2

Depends icu

>=58.2,<59.0a0

Depends libxml2

2.9.*

Depends mafft

Depends matplotlib

Depends meme

4.11.2

Depends muscle

Depends networkx

Depends numpy

Depends openjdk

Depends pandas

Depends perl

5.26.*

Depends perl-bioperl

Depends prodigal

Depends pyexcelerator

Depends pyquery

1.2.*

Depends pysvg

Depends python

>=2.7,<2.8.0a0

Depends scikit-learn

0.18.*

Depends scipy

Depends xz

5.2.*

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install antismash

and update with:

conda update antismash

or use the docker container:

docker pull quay.io/biocontainers/antismash:<tag>

(see antismash/tags for valid values for <tag>)