recipe antismash

antiSMASH - the antibiotics and Secondary Metabolite Analysis SHell

Homepage

https://docs.antismash.secondarymetabolites.org/intro/

Documentation

https://docs.antismash.secondarymetabolites.org

Developer docs

https://github.com/antismash/antismash

License

AGPL / AGPL-3.0

Recipe

/antismash/meta.yaml

Links

biotools: antismash, doi: 10.1093/nar/gkr466, doi: 10.1093/nar/gkt449, doi: 10.1093/nar/gkv437, doi: 10.1093/nar/gkx319, doi: 10.1093/nar/gkz310

antiSMASH allows the rapid genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters.

package antismash

Versions

5.1.2-3,  5.1.2-2,  5.1.2-1,  5.1.2-0,  5.1.1-0,  4.2.0-2,  4.2.0-1,  4.1.0-1,  4.1.0-0, 

5.1.2-3,  5.1.2-2,  5.1.2-1,  5.1.2-0,  5.1.1-0,  4.2.0-2,  4.2.0-1,  4.1.0-1,  4.1.0-0,  4.0.2-3,  4.0.2-2,  4.0.2-1,  4.0.1-1

Depends

• bcbio-gff

• biopython >=1.71

• blast

• diamond 0.9.*

• fasttree 2.1.*

• glimmerhmm 3.0.*

• helperlibs >=0.2.0

• hmmer 3.1b2

• hmmer2

• jinja2

• matplotlib-base

• meme <=4.11.2

• muscle 3.8.*

• numpy

• openjdk

• prodigal

• pyscss

• pysvg-py3

• python >=3.5

• scikit-learn >=0.19

• scipy

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install antismash

and update with:

conda update antismash

or use the docker container:

docker pull quay.io/biocontainers/antismash:<tag>

(see antismash/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/antismash/README.html)