-
recipe
antismash¶ antiSMASH allows the rapid genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters.
- Homepage
- License
AGPL / AGPL-3.0
- Recipe
- Links
biotools: antismash
-
package
antismash¶ 
- Versions
4.2.0-1, 4.1.0-1, 4.1.0-0, 4.0.2-3, 4.0.2-2, 4.0.2-1, 4.0.1-1
- Depends argparse
- Depends backports.lzma
- Depends bcbio-gff
- Depends biopython
>=1.65
- Depends blast
2.2.*
- Depends clustalw
- Depends cssselect
- Depends diamond
0.8.*
- Depends ete2
- Depends fasttree
2.1.*
- Depends glimmer
3.02
- Depends glimmerhmm
3.0.*
- Depends helperlibs
- Depends hmmer
3.1b2
- Depends hmmer2
- Depends icu
>=58.2,<59.0a0
- Depends libxml2
2.9.*
- Depends mafft
- Depends matplotlib
- Depends meme
4.11.2
- Depends muscle
- Depends networkx
- Depends numpy
- Depends openjdk
- Depends pandas
- Depends perl
5.26.*
- Depends perl-bioperl
- Depends prodigal
- Depends pyexcelerator
- Depends pyquery
1.2.*
- Depends pysvg
- Depends python
>=2.7,<2.8.0a0
- Depends scikit-learn
0.18.*
- Depends scipy
- Depends xz
5.2.*
- Requirements
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install antismash
and update with:
conda update antismash
or use the docker container:
docker pull quay.io/biocontainers/antismash:<tag>
(see antismash/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/antismash/README.html)