recipe bcbio_monitor

bcbio-monitor is an extension of bcbio-nextgen to visualize its progress






package bcbio_monitor

(downloads) docker_bcbio_monitor



depends dateutil:

depends flask:


depends gevent:


depends paramiko:

depends python:


depends python-graphviz:

depends pytz:

depends pyyaml:

depends requests:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bcbio_monitor

and update with::

   mamba update bcbio_monitor

To create a new environment, run:

mamba create --name myenvname bcbio_monitor

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bcbio_monitor/tags`_ for valid values for ``<tag>``)

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