recipe bioconductor-acme

Algorithms for Calculating Microarray Enrichment (ACME)

Homepage

https://bioconductor.org/packages/3.11/bioc/html/ACME.html

License

GPL (>= 2)

Recipe

/bioconductor-acme/meta.yaml

Links

biotools: acme

ACME (Algorithms for Calculating Microarray Enrichment) is a set of tools for analysing tiling array ChIP/chip, DNAse hypersensitivity, or other experiments that result in regions of the genome showing "enrichment". It does not rely on a specific array technology (although the array should be a "tiling" array), is very general (can be applied in experiments resulting in regions of enrichment), and is very insensitive to array noise or normalization methods. It is also very fast and can be applied on whole-genome tiling array experiments quite easily with enough memory.

package bioconductor-acme

Versions

2.44.0-0,  2.42.0-0,  2.40.0-1,  2.38.0-0,  2.36.0-0,  2.34.0-0,  2.32.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.3.0

• liblapack >=3.8.0,<3.9.0a0

• r-base >=4.0,<4.1.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-acme

and update with:

conda update bioconductor-acme

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-acme:<tag>

(see bioconductor-acme/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-acme/README.html)