recipe bioconductor-chipexoqual

Package with a quality control pipeline for ChIP-exo/nexus data.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/ChIPexoQual.html

License

GPL (>=2)

Recipe

/bioconductor-chipexoqual/meta.yaml

package bioconductor-chipexoqual

Versions

1.6.0-0

Depends

• bioconductor-biocparallel >=1.16.0,<1.17.0

• bioconductor-biovizbase >=1.30.0,<1.31.0

• bioconductor-genomeinfodb >=1.18.0,<1.19.0

• bioconductor-genomicalignments >=1.18.0,<1.19.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-rsamtools >=1.34.0,<1.35.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• r-base >=3.5.1,<3.5.2.0a0

• r-broom >=0.4

• r-data.table >=1.9.6

• r-dplyr >=0.5

• r-ggplot2 >=1.0

• r-hexbin >=1.27

• r-rcolorbrewer >=1.1

• r-rmarkdown

• r-scales >=0.4.0

• r-viridis >=0.3

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chipexoqual

and update with:

conda update bioconductor-chipexoqual

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chipexoqual:<tag>

(see bioconductor-chipexoqual/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-chipexoqual/README.html)