recipe bioconductor-chipexoqual

ChIPexoQual

Homepage

https://bioconductor.org/packages/3.11/bioc/html/ChIPexoQual.html

License

GPL (>=2)

Recipe

/bioconductor-chipexoqual/meta.yaml

Package with a quality control pipeline for ChIP-exo/nexus data.

package bioconductor-chipexoqual

Versions

1.12.0-0,  1.10.0-0,  1.8.0-1,  1.6.0-0

Depends

• bioconductor-biocparallel >=1.22.0,<1.23.0

• bioconductor-biovizbase >=1.36.0,<1.37.0

• bioconductor-genomeinfodb >=1.24.0,<1.25.0

• bioconductor-genomicalignments >=1.24.0,<1.25.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-rsamtools >=2.4.0,<2.5.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• r-base >=4.0,<4.1.0a0

• r-broom >=0.4

• r-data.table >=1.9.6

• r-dplyr >=0.5

• r-ggplot2 >=1.0

• r-hexbin >=1.27

• r-rcolorbrewer >=1.1

• r-rmarkdown

• r-scales >=0.4.0

• r-viridis >=0.3

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chipexoqual

and update with:

conda update bioconductor-chipexoqual

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chipexoqual:<tag>

(see bioconductor-chipexoqual/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-chipexoqual/README.html)