- recipe bioconductor-circrnaprofiler
circRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/circRNAprofiler.html
- License
GPL-3
- Recipe
R-based computational framework for a comprehensive in silico analysis of circRNAs. This computational framework allows to combine and analyze circRNAs previously detected by multiple publicly available annotation-based circRNA detection tools. It covers different aspects of circRNAs analysis from differential expression analysis, evolutionary conservation, biogenesis to functional analysis.
- package bioconductor-circrnaprofiler¶
-
- Versions
1.8.0-0
,1.6.0-0
,1.4.2-0
,1.4.0-0
,1.2.0-0
,1.0.0-0
- Depends
bioconductor-annotationhub
>=3.2.0,<3.3.0
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-bsgenome
>=1.62.0,<1.63.0
bioconductor-bsgenome.hsapiens.ucsc.hg19
>=1.4.0,<1.5.0
bioconductor-deseq2
>=1.34.0,<1.35.0
bioconductor-edger
>=3.36.0,<3.37.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-gwascat
>=2.26.0,<2.27.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-rtracklayer
>=1.54.0,<1.55.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-universalmotif
>=1.12.0,<1.13.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-circrnaprofiler
and update with:
conda update bioconductor-circrnaprofiler
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-circrnaprofiler:<tag>
(see bioconductor-circrnaprofiler/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-circrnaprofiler/README.html)