Package Recipe 'bioconductor-circrnaprofiler'

recipe bioconductor-circrnaprofiler

circRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs

Homepage: https://bioconductor.org/packages/3.11/bioc/html/circRNAprofiler.html
License: GPL-3
Recipe: /bioconductor-circrnaprofiler/meta.yaml

R-based computational framework for a comprehensive in silico analysis of circRNAs. This computational framework allows to combine and analyze circRNAs previously detected by multiple publicly available annotation-based circRNA detection tools. It covers different aspects of circRNAs analysis from differential expression analysis, evolutionary conservation, biogenesis to functional analysis.

package bioconductor-circrnaprofiler¶

Versions

1.2.0-0, 1.0.0-0

Depends

bioconductor-annotationhub >=2.20.0,<2.21.0
bioconductor-biostrings >=2.56.0,<2.57.0
bioconductor-bsgenome >=1.56.0,<1.57.0
bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0
bioconductor-deseq2 >=1.28.0,<1.29.0
bioconductor-edger >=3.30.0,<3.31.0
bioconductor-genomeinfodb >=1.24.0,<1.25.0
bioconductor-genomicranges >=1.40.0,<1.41.0
bioconductor-gwascat >=2.20.0,<2.21.0
bioconductor-iranges >=2.22.0,<2.23.0
bioconductor-rtracklayer >=1.48.0,<1.49.0
bioconductor-s4vectors >=0.26.0,<0.27.0
r-base >=4.0,<4.1.0a0
r-dplyr
r-ggplot2
r-magrittr
r-r.utils
r-readr
r-reshape2
r-rlang
r-seqinr
r-stringi
r-stringr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-circrnaprofiler

and update with:

conda update bioconductor-circrnaprofiler

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-circrnaprofiler:<tag>

(see bioconductor-circrnaprofiler/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-circrnaprofiler/README.html)