recipe bioconductor-circrnaprofiler

circRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs

Homepage

https://bioconductor.org/packages/3.14/bioc/html/circRNAprofiler.html

License

GPL-3

Recipe

/bioconductor-circrnaprofiler/meta.yaml

R-based computational framework for a comprehensive in silico analysis of circRNAs. This computational framework allows to combine and analyze circRNAs previously detected by multiple publicly available annotation-based circRNA detection tools. It covers different aspects of circRNAs analysis from differential expression analysis, evolutionary conservation, biogenesis to functional analysis.

package bioconductor-circrnaprofiler

Versions

1.8.0-0,  1.6.0-0,  1.4.2-0,  1.4.0-0,  1.2.0-0,  1.0.0-0

Depends

• bioconductor-annotationhub >=3.2.0,<3.3.0

• bioconductor-biostrings >=2.62.0,<2.63.0

• bioconductor-bsgenome >=1.62.0,<1.63.0

• bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0

• bioconductor-deseq2 >=1.34.0,<1.35.0

• bioconductor-edger >=3.36.0,<3.37.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-gwascat >=2.26.0,<2.27.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-rtracklayer >=1.54.0,<1.55.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-universalmotif >=1.12.0,<1.13.0

• r-base >=4.1,<4.2.0a0

• r-dplyr

• r-ggplot2

• r-magrittr

• r-r.utils

• r-readr

• r-reshape2

• r-rlang

• r-seqinr

• r-stringi

• r-stringr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-circrnaprofiler

and update with:

conda update bioconductor-circrnaprofiler

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-circrnaprofiler:<tag>

(see bioconductor-circrnaprofiler/tags for valid values for <tag>)

Download stats

Link to this page

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