recipe bioconductor-clomial

Infers clonal composition of a tumor

Homepage:

https://bioconductor.org/packages/3.17/bioc/html/Clomial.html

License:

GPL (>= 2)

Recipe:

/bioconductor-clomial/meta.yaml

Links:

biotools: clomial

Clomial fits binomial distributions to counts obtained from Next Gen Sequencing data of multiple samples of the same tumor. The trained parameters can be interpreted to infer the clonal structure of the tumor.

package bioconductor-clomial

(downloads) docker_bioconductor-clomial

versions:
1.36.0-0,  1.34.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1, 

1.36.0-0,  1.34.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.20.0-0,  1.18.1-0,  1.16.0-0,  1.14.0-0,  1.12.0-0

depends r-base:

>=4.3,<4.4.0a0

depends r-matrixstats:

depends r-permute:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-clomial

and update with::

   mamba update bioconductor-clomial

To create a new environment, run:

mamba create --name myenvname bioconductor-clomial

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-clomial:<tag>

(see `bioconductor-clomial/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-clomial/README.html)