-
recipe
bioconductor-cner
CNE Detection and Visualization
- Homepage
- License
GPL-2 | file LICENSE
- Recipe
- Links
biotools: cner, doi: 10.1038/nmeth.3252
Large-scale identification and advanced visualization of sets of conserved noncoding elements.
-
package
bioconductor-cner
¶ -
- Versions
1.26.0-0
,1.24.0-0
,1.22.0-0
,1.20.0-1
,1.18.1-0
,1.16.1-0
,1.14.0-0
,1.12.1-0
,1.10.2-0
- Depends
bioconductor-annotate
>=1.68.0,<1.69.0
bioconductor-biocgenerics
>=0.36.0,<0.37.0
bioconductor-biostrings
>=2.58.0,<2.59.0
bioconductor-genomeinfodb
>=1.26.0,<1.27.0
bioconductor-genomicalignments
>=1.26.0,<1.27.0
bioconductor-genomicranges
>=1.42.0,<1.43.0
bioconductor-go.db
>=3.12.1,<3.13.0
bioconductor-iranges
>=2.24.0,<2.25.0
bioconductor-keggrest
>=1.30.0,<1.31.0
bioconductor-rtracklayer
>=1.50.0,<1.51.0
bioconductor-s4vectors
>=0.28.0,<0.29.0
bioconductor-xvector
>=0.30.0,<0.31.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=7.5.0
liblapack
>=3.8.0,<4.0a0
r-base
>=4.0,<4.1.0a0
r-dbi
>=0.7
r-ggplot2
>=2.1.0
r-powerlaw
>=0.60.3
r-r.utils
>=2.3.0
r-readr
>=0.2.2
r-reshape2
>=1.4.1
r-rsqlite
>=0.11.4
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-cner
and update with:
conda update bioconductor-cner
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cner:<tag>
(see bioconductor-cner/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cner/README.html)