- recipe bioconductor-cner
CNE Detection and Visualization
- Homepage:
- License:
GPL-2 | file LICENSE
- Recipe:
- Links:
biotools: cner, doi: 10.1038/nmeth.3252
Large-scale identification and advanced visualization of sets of conserved noncoding elements.
- package bioconductor-cner¶
-
- Versions:
1.34.0-0
,1.30.0-2
,1.30.0-1
,1.30.0-0
,1.28.0-0
,1.26.0-1
,1.26.0-0
,1.24.0-0
,1.22.0-0
,1.34.0-0
,1.30.0-2
,1.30.0-1
,1.30.0-0
,1.28.0-0
,1.26.0-1
,1.26.0-0
,1.24.0-0
,1.22.0-0
,1.20.0-1
,1.18.1-0
,1.16.1-0
,1.14.0-0
,1.12.1-0
,1.10.2-0
- Depends:
bioconductor-annotate
>=1.76.0,<1.77.0
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicalignments
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-go.db
>=3.16.0,<3.17.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-keggrest
>=1.38.0,<1.39.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-xvector
>=0.38.0,<0.39.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
r-base
>=4.2,<4.3.0a0
r-dbi
>=0.7
r-ggplot2
>=2.1.0
r-powerlaw
>=0.60.3
r-r.utils
>=2.3.0
r-readr
>=0.2.2
r-reshape2
>=1.4.1
r-rsqlite
>=0.11.4
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-cner
and update with:
conda update bioconductor-cner
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cner:<tag>
(see bioconductor-cner/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cner/README.html)