recipe bioconductor-cner

CNE Detection and Visualization

Homepage

https://bioconductor.org/packages/3.14/bioc/html/CNEr.html

License

GPL-2 | file LICENSE

Recipe

/bioconductor-cner/meta.yaml

Links

biotools: cner, doi: 10.1038/nmeth.3252

Large-scale identification and advanced visualization of sets of conserved noncoding elements.

package bioconductor-cner

Versions

1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.1-0,  1.16.1-0, 

1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.1-0,  1.16.1-0,  1.14.0-0,  1.12.1-0,  1.10.2-0

Depends

• bioconductor-annotate >=1.72.0,<1.73.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-biostrings >=2.62.0,<2.63.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicalignments >=1.30.0,<1.31.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-go.db >=3.14.0,<3.15.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-keggrest >=1.34.0,<1.35.0

• bioconductor-rtracklayer >=1.54.0,<1.55.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-xvector >=0.34.0,<0.35.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=9.4.0

• liblapack >=3.8.0,<4.0a0

• r-base >=4.1,<4.2.0a0

• r-dbi >=0.7

• r-ggplot2 >=2.1.0

• r-powerlaw >=0.60.3

• r-r.utils >=2.3.0

• r-readr >=0.2.2

• r-reshape2 >=1.4.1

• r-rsqlite >=0.11.4

Required By

• bioconductor-tfbstools

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cner

and update with:

conda update bioconductor-cner

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cner:<tag>

(see bioconductor-cner/tags for valid values for <tag>)

Download stats

Link to this page

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