recipe bioconductor-cner

CNE Detection and Visualization

Homepage

https://bioconductor.org/packages/3.12/bioc/html/CNEr.html

License

GPL-2 | file LICENSE

Recipe

/bioconductor-cner/meta.yaml

Links

biotools: cner, doi: 10.1038/nmeth.3252

Large-scale identification and advanced visualization of sets of conserved noncoding elements.

package bioconductor-cner

Versions

1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.1-0,  1.16.1-0,  1.14.0-0,  1.12.1-0,  1.10.2-0

Depends

• bioconductor-annotate >=1.68.0,<1.69.0

• bioconductor-biocgenerics >=0.36.0,<0.37.0

• bioconductor-biostrings >=2.58.0,<2.59.0

• bioconductor-genomeinfodb >=1.26.0,<1.27.0

• bioconductor-genomicalignments >=1.26.0,<1.27.0

• bioconductor-genomicranges >=1.42.0,<1.43.0

• bioconductor-go.db >=3.12.1,<3.13.0

• bioconductor-iranges >=2.24.0,<2.25.0

• bioconductor-keggrest >=1.30.0,<1.31.0

• bioconductor-rtracklayer >=1.50.0,<1.51.0

• bioconductor-s4vectors >=0.28.0,<0.29.0

• bioconductor-xvector >=0.30.0,<0.31.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.5.0

• liblapack >=3.8.0,<4.0a0

• r-base >=4.0,<4.1.0a0

• r-dbi >=0.7

• r-ggplot2 >=2.1.0

• r-powerlaw >=0.60.3

• r-r.utils >=2.3.0

• r-readr >=0.2.2

• r-reshape2 >=1.4.1

• r-rsqlite >=0.11.4

Required By

• bioconductor-tfbstools

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cner

and update with:

conda update bioconductor-cner

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cner:<tag>

(see bioconductor-cner/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cner/README.html)