recipe bioconductor-cner

CNE Detection and Visualization

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/CNEr.html

License:

GPL-2 | file LICENSE

Recipe:

/bioconductor-cner/meta.yaml

Links:

biotools: cner, doi: 10.1038/nmeth.3252

Large-scale identification and advanced visualization of sets of conserved noncoding elements.

package bioconductor-cner

Versions:

1.34.0-0,  1.30.0-2,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0, 

1.34.0-0,  1.30.0-2,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.1-0,  1.16.1-0,  1.14.0-0,  1.12.1-0,  1.10.2-0

Depends:

• bioconductor-annotate >=1.76.0,<1.77.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicalignments >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-go.db >=3.16.0,<3.17.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-keggrest >=1.38.0,<1.39.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-xvector >=0.38.0,<0.39.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• r-base >=4.2,<4.3.0a0

• r-dbi >=0.7

• r-ggplot2 >=2.1.0

• r-powerlaw >=0.60.3

• r-r.utils >=2.3.0

• r-readr >=0.2.2

• r-reshape2 >=1.4.1

• r-rsqlite >=0.11.4

Required By:

• bioconductor-tfbstools

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-cner

and update with:

conda update bioconductor-cner

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cner:<tag>

(see bioconductor-cner/tags for valid values for <tag>)

Download stats

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