recipe bioconductor-compcoder

This package provides extensive functionality for comparing results obtained by different methods for differential expression analysis of RNAseq data. It also contains functions for simulating count data and interfaces to several packages for performing the differential expression analysis.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/compcodeR.html

License

GPL (>= 2)

Recipe

/bioconductor-compcoder/meta.yaml

package bioconductor-compcoder

(downloads) docker_bioconductor-compcoder

Versions

1.20.0-0, 1.18.1-0, 1.18.0-0

Depends bioconductor-edger

>=3.26.0,<3.27.0

Depends bioconductor-limma

>=3.40.0,<3.41.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-catools

Depends r-gdata

Depends r-ggplot2

Depends r-gplots

Depends r-gtools

Depends r-kernsmooth

Depends r-knitr

>=1.2

Depends r-lattice

>=0.16

Depends r-markdown

Depends r-mass

Depends r-modeest

Depends r-rocr

Depends r-sm

Depends r-stringr

Depends r-vioplot

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-compcoder

and update with:

conda update bioconductor-compcoder

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-compcoder:<tag>

(see bioconductor-compcoder/tags for valid values for <tag>)