recipe bioconductor-crisprviz

Visualization Functions for CRISPR gRNAs

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/crisprViz.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-crisprviz/meta.yaml

Provides functionalities to visualize and contextualize CRISPR guide RNAs (gRNAs) on genomic tracks across nucleases and applications. Works in conjunction with the crisprBase and crisprDesign Bioconductor packages. Plots are produced using the Gviz framework.

package bioconductor-crisprviz

Versions:

1.0.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-bsgenome >=1.66.0,<1.67.0

• bioconductor-crisprbase >=1.2.0,<1.3.0

• bioconductor-crisprdesign >=1.0.0,<1.1.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-gviz >=1.42.0,<1.43.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

Required By:

• bioconductor-crisprverse

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-crisprviz

and update with:

conda update bioconductor-crisprviz

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-crisprviz:<tag>

(see bioconductor-crisprviz/tags for valid values for <tag>)

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