- recipe bioconductor-crisprviz
Visualization Functions for CRISPR gRNAs
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/crisprViz.html
- License:
MIT + file LICENSE
- Recipe:
Provides functionalities to visualize and contextualize CRISPR guide RNAs (gRNAs) on genomic tracks across nucleases and applications. Works in conjunction with the crisprBase and crisprDesign Bioconductor packages. Plots are produced using the Gviz framework.
- package bioconductor-crisprviz¶
-
- Versions:
1.0.0-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-bsgenome
>=1.66.0,<1.67.0
bioconductor-crisprbase
>=1.2.0,<1.3.0
bioconductor-crisprdesign
>=1.0.0,<1.1.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicfeatures
>=1.50.0,<1.51.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-gviz
>=1.42.0,<1.43.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-crisprviz
and update with:
conda update bioconductor-crisprviz
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-crisprviz:<tag>
(see bioconductor-crisprviz/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-crisprviz/README.html)