recipe bioconductor-davidtiling

Data and analysis scripts for David, Huber et al. yeast tiling array paper

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/davidTiling.html

License:

LGPL

Recipe:

/bioconductor-davidtiling/meta.yaml

This package contains the data for the paper by L. David et al. in PNAS 2006 (PMID 16569694): 8 CEL files of Affymetrix genechips, an ExpressionSet object with the raw feature data, a probe annotation data structure for the chip and the yeast genome annotation (GFF file) that was used. In addition, some custom-written analysis functions are provided, as well as R scripts in the scripts directory.

package bioconductor-davidtiling

Versions:

1.38.0-0,  1.34.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1, 

1.38.0-0,  1.34.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.22.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-data-packages >=20221109

• bioconductor-go.db >=3.16.0,<3.17.0

• bioconductor-tilingarray >=1.76.0,<1.77.0

• curl

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-davidtiling

and update with:

conda update bioconductor-davidtiling

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-davidtiling:<tag>

(see bioconductor-davidtiling/tags for valid values for <tag>)

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