recipe bioconductor-dropletutils

Provides a number of utility functions for handling single-cell (RNA-seq) data from droplet technologies such as 10X Genomics. This includes data loading from count matrices or molecule information files, identification of cells from empty droplets, removal of barcode-swapped pseudo-cells, and downsampling of the count matrix.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/DropletUtils.html

License

GPL-3

Recipe

/bioconductor-dropletutils/meta.yaml

Links

biotools: DropletUtils

package bioconductor-dropletutils

(downloads) docker_bioconductor-dropletutils

Versions

1.2.1-0, 1.0.3-0

Depends bioconductor-beachmat

>=1.4.0,<1.5.0

Depends bioconductor-biocparallel

>=1.16.0,<1.17.0

Depends bioconductor-edger

>=3.24.0,<3.25.0

Depends bioconductor-hdf5array

>=1.10.0,<1.11.0

Depends bioconductor-rhdf5

>=2.26.0,<2.27.0

Depends bioconductor-rhdf5lib

>=1.4.0,<1.5.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends bioconductor-singlecellexperiment

>=1.4.0,<1.5.0

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-matrix

Depends r-rcpp

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-dropletutils

and update with:

conda update bioconductor-dropletutils

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-dropletutils:<tag>

(see bioconductor-dropletutils/tags for valid values for <tag>)