recipe bioconductor-dropletutils

Provides a number of utility functions for handling single-cell (RNA-seq) data from droplet technologies such as 10X Genomics. This includes data loading, identification of cells from empty droplets, removal of barcode-swapped pseudo-cells, and downsampling of the count matrix.

Homepage

https://bioconductor.org/packages/3.8/bioc/html/DropletUtils.html

License

GPL-3

Recipe

/bioconductor-dropletutils/meta.yaml

Links

biotools: DropletUtils

package bioconductor-dropletutils

(downloads) docker_bioconductor-dropletutils

Versions

1.2.1-0, 1.0.3-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-dropletutils

and update with:

conda update bioconductor-dropletutils

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-dropletutils:<tag>

(see bioconductor-dropletutils/tags for valid values for <tag>)