recipe bioconductor-erssa

The ERSSA package takes user supplied RNA-seq differential expression dataset and calculates the number of differentially expressed genes at varying biological replicate levels. This allows the user to determine, without relying on any a priori assumptions, whether sufficient differential detection has been acheived with their RNA-seq dataset.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/ERSSA.html

License

GPL-3 | file LICENSE

Recipe

/bioconductor-erssa/meta.yaml

package bioconductor-erssa

(downloads) docker_bioconductor-erssa

Versions

1.0.0-0

Depends bioconductor-biocparallel

>=1.16.0,<1.17.0

Depends bioconductor-deseq2

>=1.22.0,<1.23.0

Depends bioconductor-edger

>=3.24.0,<3.25.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-ggplot2

>=3.0.0

Depends r-plyr

>=1.8.4

Depends r-rcolorbrewer

>=1.1-2

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-erssa

and update with:

conda update bioconductor-erssa

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-erssa:<tag>

(see bioconductor-erssa/tags for valid values for <tag>)