recipe bioconductor-genega

Design gene based on both mRNA secondary structure and codon usage bias using Genetic algorithm

Homepage

https://bioconductor.org/packages/3.10/bioc/html/GeneGA.html

License

GPL version 2

Recipe

/bioconductor-genega/meta.yaml

Links

biotools: genega, doi: 10.1186/1748-7188-6-26

R based Genetic algorithm for gene expression optimization by considering both mRNA secondary structure and codon usage bias, GeneGA includes the information of highly expressed genes of almost 200 genomes. Meanwhile, Vienna RNA Package is needed to ensure GeneGA to function properly.

package bioconductor-genega

(downloads) docker_bioconductor-genega

Versions

1.36.0-0, 1.34.0-1, 1.34.0-0, 1.32.0-0, 1.30.0-0, 1.28.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-genega

and update with:

conda update bioconductor-genega

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genega:<tag>

(see bioconductor-genega/tags for valid values for <tag>)