recipe bioconductor-genetclassifier

Classify diseases and build associated gene networks using gene expression profiles

Homepage

https://bioconductor.org/packages/3.11/bioc/html/geNetClassifier.html

License

GPL (>= 2)

Recipe

/bioconductor-genetclassifier/meta.yaml

Links

biotools: genetclassifier

Comprehensive package to automatically train and validate a multi-class SVM classifier based on gene expression data. Provides transparent selection of gene markers, their coexpression networks, and an interface to query the classifier.

package bioconductor-genetclassifier

Versions

1.28.0-0,  1.26.0-0,  1.24.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-ebarrays >=2.52.0,<2.53.0

• bioconductor-minet >=3.46.0,<3.47.0

• r-base >=4.0,<4.1.0a0

• r-e1071

Required By

• bioconductor-biocancer

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-genetclassifier

and update with:

conda update bioconductor-genetclassifier

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genetclassifier:<tag>

(see bioconductor-genetclassifier/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-genetclassifier/README.html)