recipe bioconductor-gviz

Plotting data and annotation information along genomic coordinates

Homepage

https://bioconductor.org/packages/3.10/bioc/html/Gviz.html

License

Artistic-2.0

Recipe

/bioconductor-gviz/meta.yaml

Links

biotools: gviz

Genomic data analyses requires integrated visualization of known genomic information and new experimental data. Gviz uses the biomaRt and the rtracklayer packages to perform live annotation queries to Ensembl and UCSC and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data.

package bioconductor-gviz

(downloads) docker_bioconductor-gviz

Versions

1.30.0-0, 1.28.0-1, 1.26.4-0, 1.24.0-0, 1.22.3-0, 1.22.0-0, 1.20.0-0, 1.16.5-2, 1.14.2-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gviz

and update with:

conda update bioconductor-gviz

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gviz:<tag>

(see bioconductor-gviz/tags for valid values for <tag>)