recipe bioconductor-icheck

QC Pipeline and Data Analysis Tools for High-Dimensional Illumina mRNA Expression Data

Homepage

https://bioconductor.org/packages/3.14/bioc/html/iCheck.html

License

GPL (>= 2)

Recipe

/bioconductor-icheck/meta.yaml

QC pipeline and data analysis tools for high-dimensional Illumina mRNA expression data.

package bioconductor-icheck

Versions

1.24.0-0,  1.22.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.12.0-0

Depends

• bioconductor-affy >=1.72.0,<1.73.0

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-geneselectmmd >=2.38.0,<2.39.0

• bioconductor-limma >=3.50.0,<3.51.0

• bioconductor-lumi >=2.46.0,<2.47.0

• bioconductor-preprocesscore >=1.56.0,<1.57.0

• r-base >=4.1,<4.2.0a0

• r-gplots

• r-lmtest

• r-mass

• r-randomforest

• r-rgl

• r-scatterplot3d

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-icheck

and update with:

conda update bioconductor-icheck

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-icheck:<tag>

(see bioconductor-icheck/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-icheck/README.html)