recipe bioconductor-isobar

Analysis and quantitation of isobarically tagged MSMS proteomics data

Homepage

https://bioconductor.org/packages/3.14/bioc/html/isobar.html

License

LGPL-2

Recipe

/bioconductor-isobar/meta.yaml

isobar provides methods for preprocessing, normalization, and report generation for the analysis of quantitative mass spectrometry proteomics data labeled with isobaric tags, such as iTRAQ and TMT. Features modules for integrating and validating PTM-centric datasets (isobar-PTM). More information on http://www.ms-isobar.org.

package bioconductor-isobar

Versions

1.40.0-0,  1.38.0-0,  1.36.0-1,  1.36.0-0,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.28.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biomart >=2.50.0,<2.51.0

• r-base >=4.1,<4.2.0a0

• r-distr

• r-ggplot2

• r-plyr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-isobar

and update with:

conda update bioconductor-isobar

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-isobar:<tag>

(see bioconductor-isobar/tags for valid values for <tag>)

Download stats

Link to this page

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