recipe bioconductor-linkhd

LinkHD: a versatile framework to explore and integrate heterogeneous data

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/LinkHD.html

License:

GPL-3

Recipe:

/bioconductor-linkhd/meta.yaml

Here we present Link-HD, an approach to integrate heterogeneous datasets, as a generalization of STATIS-ACT (“Structuration des Tableaux A Trois Indices de la Statistique–Analyse Conjointe de Tableaux”), a family of methods to join and compare information from multiple subspaces. However, STATIS-ACT has some drawbacks since it only allows continuous data and it is unable to establish relationships between samples and features. In order to tackle these constraints, we incorporate multiple distance options and a linear regression based Biplot model in order to stablish relationships between observations and variable and perform variable selection.

package bioconductor-linkhd

Versions:

1.8.0-0,  1.6.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-multiassayexperiment >=1.20.0,<1.21.0

• r-base >=4.1,<4.2.0a0

• r-cluster

• r-data.table

• r-emmeans

• r-ggplot2

• r-ggpubr

• r-gridextra

• r-reshape2

• r-rio

• r-scales

• r-vegan

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-linkhd

and update with:

conda update bioconductor-linkhd

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-linkhd:<tag>

(see bioconductor-linkhd/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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