recipe bioconductor-lmdme

Linear Model decomposition for Designed Multivariate Experiments

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/lmdme.html

License:

GPL (>=2)

Recipe:

/bioconductor-lmdme/meta.yaml

Links:

biotools: lmdme

linear ANOVA decomposition of Multivariate Designed Experiments implementation based on limma lmFit. Features: i)Flexible formula type interface, ii) Fast limma based implementation, iii) p-values for each estimated coefficient levels in each factor, iv) F values for factor effects and v) plotting functions for PCA and PLS.

package bioconductor-lmdme

(downloads) docker_bioconductor-lmdme

versions:
1.44.0-0,  1.42.0-0,  1.40.0-0,  1.36.0-0,  1.34.0-0,  1.32.0-2,  1.32.0-0,  1.30.0-0,  1.28.0-1, 

1.44.0-0,  1.42.0-0,  1.40.0-0,  1.36.0-0,  1.34.0-0,  1.32.0-2,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-0

depends bioconductor-limma:

>=3.58.0,<3.59.0

depends bioconductor-stemhypoxia:

>=1.38.0,<1.39.0

depends r-base:

>=4.3,<4.4.0a0

depends r-pls:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-lmdme

and update with::

   mamba update bioconductor-lmdme

To create a new environment, run:

mamba create --name myenvname bioconductor-lmdme

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-lmdme:<tag>

(see `bioconductor-lmdme/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-lmdme/README.html)