recipe bioconductor-masigpro

Significant Gene Expression Profile Differences in Time Course Gene Expression Data

Homepage

https://bioconductor.org/packages/3.14/bioc/html/maSigPro.html

License

GPL (>= 2)

Recipe

/bioconductor-masigpro/meta.yaml

Links

biotools: masigpro, doi: 10.1093/bioinformatics/btu333

maSigPro is a regression based approach to find genes for which there are significant gene expression profile differences between experimental groups in time course microarray and RNA-Seq experiments.

package bioconductor-masigpro

Versions

1.66.0-0,  1.64.0-0,  1.62.0-1,  1.62.0-0,  1.60.0-0,  1.58.0-0,  1.56.0-1,  1.54.0-0,  1.52.0-0, 

1.66.0-0,  1.64.0-0,  1.62.0-1,  1.62.0-0,  1.60.0-0,  1.58.0-0,  1.56.0-1,  1.54.0-0,  1.52.0-0,  1.50.0-0,  1.49.4-0,  1.49.3-0,  1.49.0-0,  1.48.0-0,  1.46.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• r-base >=4.1,<4.2.0a0

• r-mass

• r-mclust

• r-venn

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-masigpro

and update with:

conda update bioconductor-masigpro

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-masigpro:<tag>

(see bioconductor-masigpro/tags for valid values for <tag>)

Download stats

Link to this page

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