recipe bioconductor-methylpipe

Base resolution DNA methylation data analysis

Homepage

https://bioconductor.org/packages/3.12/bioc/html/methylPipe.html

License

GPL(>=2)

Recipe

/bioconductor-methylpipe/meta.yaml

Links

biotools: methylpipe

Memory efficient analysis of base resolution DNA methylation data in both the CpG and non-CpG sequence context. Integration of DNA methylation data derived from any methodology providing base- or low-resolution data.

package bioconductor-methylpipe

Versions

1.24.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-0

Depends

• bioconductor-biocgenerics >=0.36.0,<0.37.0

• bioconductor-biostrings >=2.58.0,<2.59.0

• bioconductor-genomeinfodb >=1.26.0,<1.27.0

• bioconductor-genomicalignments >=1.26.0,<1.27.0

• bioconductor-genomicranges >=1.42.0,<1.43.0

• bioconductor-gviz >=1.34.0,<1.35.0

• bioconductor-iranges >=2.24.0,<2.25.0

• bioconductor-marray >=1.68.0,<1.69.0

• bioconductor-rsamtools >=2.6.0,<2.7.0

• bioconductor-s4vectors >=0.28.0,<0.29.0

• bioconductor-summarizedexperiment >=1.20.0,<1.21.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.5.0

• liblapack >=3.8.0,<4.0a0

• r-base >=4.0,<4.1.0a0

• r-data.table

• r-gplots

Required By

• bioconductor-listeretalbsseq

• bioconductor-compepitools

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-methylpipe

and update with:

conda update bioconductor-methylpipe

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-methylpipe:<tag>

(see bioconductor-methylpipe/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-methylpipe/README.html)