recipe bioconductor-methylpipe

Base resolution DNA methylation data analysis

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/methylPipe.html

License:

GPL(>=2)

Recipe:

/bioconductor-methylpipe/meta.yaml

Links:

biotools: methylpipe

Memory efficient analysis of base resolution DNA methylation data in both the CpG and non-CpG sequence context. Integration of DNA methylation data derived from any methodology providing base- or low-resolution data.

package bioconductor-methylpipe

Versions:

1.27.0-1,  1.27.0-0,  1.26.0-0,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.16.0-0, 

1.27.0-1,  1.27.0-0,  1.26.0-0,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-0

Depends:

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-biostrings >=2.62.0,<2.63.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicalignments >=1.30.0,<1.31.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-gviz >=1.38.0,<1.39.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-marray >=1.72.0,<1.73.0

• bioconductor-rsamtools >=2.10.0,<2.11.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=10.3.0

• liblapack >=3.8.0,<4.0a0

• r-base >=4.1,<4.2.0a0

• r-data.table

• r-gplots

Required By:

• bioconductor-compepitools

• bioconductor-listeretalbsseq

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-methylpipe

and update with:

conda update bioconductor-methylpipe

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-methylpipe:<tag>

(see bioconductor-methylpipe/tags for valid values for <tag>)

Download stats

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