recipe bioconductor-methylpipe

Memory efficient analysis of base resolution DNA methylation data in both the CpG and non-CpG sequence context. Integration of DNA methylation data derived from any methodology providing base- or low-resolution data.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/methylPipe.html

License

GPL(>=2)

Recipe

/bioconductor-methylpipe/meta.yaml

Links

biotools: methylpipe

package bioconductor-methylpipe

Versions

1.18.0-1, 1.16.0-0, 1.14.0-0, 1.12.0-0, 1.10.0-0

Depends

• bioconductor-biocgenerics >=0.30.0,<0.31.0

• bioconductor-biostrings >=2.52.0,<2.53.0

• bioconductor-genomeinfodb >=1.20.0,<1.21.0

• bioconductor-genomicalignments >=1.20.0,<1.21.0

• bioconductor-genomicranges >=1.36.0,<1.37.0

• bioconductor-gviz >=1.28.0,<1.29.0

• bioconductor-iranges >=2.18.0,<2.19.0

• bioconductor-marray >=1.62.0,<1.63.0

• bioconductor-rsamtools >=2.0.0,<2.1.0

• bioconductor-s4vectors >=0.22.0,<0.23.0

• bioconductor-summarizedexperiment >=1.14.0,<1.15.0

• libgcc-ng >=7.3.0

• r-base >=3.6,<3.7.0a0

• r-data.table

• r-gplots

Required By

• bioconductor-compepitools

• bioconductor-listeretalbsseq

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-methylpipe

and update with:

conda update bioconductor-methylpipe

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-methylpipe:<tag>

(see bioconductor-methylpipe/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-methylpipe/README.html)