- recipe bioconductor-methylpipe
Base resolution DNA methylation data analysis
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/methylPipe.html
- License:
GPL(>=2)
- Recipe:
- Links:
biotools: methylpipe
Memory efficient analysis of base resolution DNA methylation data in both the CpG and non-CpG sequence context. Integration of DNA methylation data derived from any methodology providing base- or low-resolution data.
- package bioconductor-methylpipe¶
-
- Versions:
1.27.0-1
,1.27.0-0
,1.26.0-0
,1.24.0-1
,1.24.0-0
,1.22.0-0
,1.20.0-0
,1.18.0-1
,1.16.0-0
,1.27.0-1
,1.27.0-0
,1.26.0-0
,1.24.0-1
,1.24.0-0
,1.22.0-0
,1.20.0-0
,1.18.0-1
,1.16.0-0
,1.14.0-0
,1.12.0-0
,1.10.0-0
- Depends:
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicalignments
>=1.30.0,<1.31.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-gviz
>=1.38.0,<1.39.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-marray
>=1.72.0,<1.73.0
bioconductor-rsamtools
>=2.10.0,<2.11.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-methylpipe
and update with:
conda update bioconductor-methylpipe
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-methylpipe:<tag>
(see bioconductor-methylpipe/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-methylpipe/README.html)