Package Recipe 'bioconductor-methylpipe'

recipe bioconductor-methylpipe

Base resolution DNA methylation data analysis

Homepage:: https://bioconductor.org/packages/3.16/bioc/html/methylPipe.html
License:: GPL(>=2)
Recipe:: /bioconductor-methylpipe/meta.yaml
Links:: biotools: methylpipe

Memory efficient analysis of base resolution DNA methylation data in both the CpG and non-CpG sequence context. Integration of DNA methylation data derived from any methodology providing base- or low-resolution data.

package bioconductor-methylpipe¶

Versions:

1.32.0-0, 1.27.0-1, 1.27.0-0, 1.26.0-0, 1.24.0-1, 1.24.0-0, 1.22.0-0, 1.20.0-0, 1.18.0-1,

1.32.0-0, 1.27.0-1, 1.27.0-0, 1.26.0-0, 1.24.0-1, 1.24.0-0, 1.22.0-0, 1.20.0-0, 1.18.0-1, 1.16.0-0, 1.14.0-0, 1.12.0-0, 1.10.0-0

Depends:

bioconductor-biocgenerics >=0.44.0,<0.45.0
bioconductor-biostrings >=2.66.0,<2.67.0
bioconductor-genomeinfodb >=1.34.0,<1.35.0
bioconductor-genomicalignments >=1.34.0,<1.35.0
bioconductor-genomicranges >=1.50.0,<1.51.0
bioconductor-gviz >=1.42.0,<1.43.0
bioconductor-iranges >=2.32.0,<2.33.0
bioconductor-marray >=1.76.0,<1.77.0
bioconductor-rsamtools >=2.14.0,<2.15.0
bioconductor-s4vectors >=0.36.0,<0.37.0
bioconductor-summarizedexperiment >=1.28.0,<1.29.0
libblas >=3.9.0,<4.0a0
libgcc-ng >=12
liblapack >=3.9.0,<4.0a0
r-base >=4.2,<4.3.0a0
r-data.table
r-gplots

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-methylpipe

and update with:

conda update bioconductor-methylpipe

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-methylpipe:<tag>

(see bioconductor-methylpipe/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-methylpipe/README.html)