recipe bioconductor-minfi

Tools to analyze & visualize Illumina Infinium methylation arrays.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/minfi.html

License

Artistic-2.0

Recipe

/bioconductor-minfi/meta.yaml

Links

biotools: minfi

package bioconductor-minfi

(downloads) docker_bioconductor-minfi

Versions

1.28.0-0, 1.26.2-0, 1.24.0-0, 1.22.1-0, 1.20.0-0, 1.16.1-0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-biocparallel

>=1.16.0,<1.17.0

Depends bioconductor-biostrings

>=2.50.0,<2.51.0

Depends bioconductor-bumphunter

>=1.24.0,<1.25.0

Depends bioconductor-delayedarray

>=0.8.0,<0.9.0

Depends bioconductor-delayedmatrixstats

>=1.4.0,<1.5.0

Depends bioconductor-genefilter

>=1.64.0,<1.65.0

Depends bioconductor-genomeinfodb

>=1.18.0,<1.19.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-geoquery

>=2.50.0,<2.51.0

Depends bioconductor-hdf5array

>=1.10.0,<1.11.0

Depends bioconductor-illuminaio

>=0.24.0,<0.25.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-limma

>=3.38.0,<3.39.0

Depends bioconductor-preprocesscore

>=1.44.0,<1.45.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends bioconductor-siggenes

>=1.56.0,<1.57.0

Depends bioconductor-summarizedexperiment

>=1.12.0,<1.13.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-beanplot

Depends r-data.table

Depends r-lattice

Depends r-mass

Depends r-mclust

Depends r-nlme

Depends r-nor1mix

Depends r-quadprog

Depends r-rcolorbrewer

Depends r-reshape

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-minfi

and update with:

conda update bioconductor-minfi

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-minfi:<tag>

(see bioconductor-minfi/tags for valid values for <tag>)