recipe bioconductor-minfi

Analyze Illumina Infinium DNA methylation arrays

Homepage

https://bioconductor.org/packages/3.10/bioc/html/minfi.html

License

Artistic-2.0

Recipe

/bioconductor-minfi/meta.yaml

Links

biotools: minfi

Tools to analyze & visualize Illumina Infinium methylation arrays.

package bioconductor-minfi

Versions

1.32.0-0, 1.30.0-1, 1.28.0-0, 1.26.2-0, 1.24.0-0, 1.22.1-0, 1.20.0-0, 1.16.1-0

Depends

• bioconductor-biobase >=2.46.0,<2.47.0

• bioconductor-biocgenerics >=0.32.0,<0.33.0

• bioconductor-biocparallel >=1.20.0,<1.21.0

• bioconductor-biostrings >=2.54.0,<2.55.0

• bioconductor-bumphunter >=1.28.0,<1.29.0

• bioconductor-delayedarray >=0.12.0,<0.13.0

• bioconductor-delayedmatrixstats >=1.8.0,<1.9.0

• bioconductor-genefilter >=1.68.0,<1.69.0

• bioconductor-genomeinfodb >=1.22.0,<1.23.0

• bioconductor-genomicranges >=1.38.0,<1.39.0

• bioconductor-geoquery >=2.54.0,<2.55.0

• bioconductor-hdf5array >=1.14.0,<1.15.0

• bioconductor-illuminaio >=0.28.0,<0.29.0

• bioconductor-iranges >=2.20.0,<2.21.0

• bioconductor-limma >=3.42.0,<3.43.0

• bioconductor-preprocesscore >=1.48.0,<1.49.0

• bioconductor-s4vectors >=0.24.0,<0.25.0

• bioconductor-siggenes >=1.60.0,<1.61.0

• bioconductor-summarizedexperiment >=1.16.0,<1.17.0

• r-base >=3.6,<3.7.0a0

• r-beanplot

• r-data.table

• r-lattice

• r-mass

• r-mclust

• r-nlme

• r-nor1mix

• r-quadprog

• r-rcolorbrewer

• r-reshape

Required By

• bioconductor-meal

• bioconductor-compartmap

• bioconductor-methyvimdata

• bioconductor-remp

• bioconductor-flowsorted.dlpfc.450k

• bioconductor-methylcc

• bioconductor-bigmelon

• bioconductor-dmrcate

• bioconductor-minfidataepic

• bioconductor-missmethyl

• bioconductor-quantro

• bioconductor-enmix

• bioconductor-flowsorted.blood.epic

• bioconductor-conumee

• bioconductor-methylaid

• bioconductor-flowsorted.blood.450k

• bioconductor-funtoonorm

• bioconductor-illuminahumanmethylationepicmanifest

• bioconductor-methyvim

• bioconductor-flowsorted.cordblood.450k

• bioconductor-minfidata

• bioconductor-shinymethyl

• bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19

• bioconductor-flowsorted.cordbloodcombined.450k

• bioconductor-illuminahumanmethylationepicanno.ilm10b3.hg19

• bioconductor-flowsorted.cordbloodnorway.450k

• bioconductor-illuminahumanmethylationepicanno.ilm10b4.hg19

• bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19

• bioconductor-methylumi

• bioconductor-illuminahumanmethylation450kmanifest

• bioconductor-skewr

• bioconductor-champ

• bioconductor-illuminahumanmethylation27kmanifest

• bioconductor-illuminahumanmethylation27kanno.ilmn12.hg19

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-minfi

and update with:

conda update bioconductor-minfi

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-minfi:<tag>

(see bioconductor-minfi/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-minfi/README.html)