recipe bioconductor-minfi

Analyze Illumina Infinium DNA methylation arrays

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/minfi.html

License:

Artistic-2.0

Recipe:

/bioconductor-minfi/meta.yaml

Links:

biotools: minfi

Tools to analyze & visualize Illumina Infinium methylation arrays.

package bioconductor-minfi

Versions:

1.44.0-0,  1.40.0-0,  1.38.0-0,  1.36.0-1,  1.36.0-0,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.28.0-0, 

1.44.0-0,  1.40.0-0,  1.38.0-0,  1.36.0-1,  1.36.0-0,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.28.0-0,  1.26.2-0,  1.24.0-0,  1.22.1-0,  1.20.0-0,  1.16.1-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-bumphunter >=1.40.0,<1.41.0

• bioconductor-delayedarray >=0.24.0,<0.25.0

• bioconductor-delayedmatrixstats >=1.20.0,<1.21.0

• bioconductor-genefilter >=1.80.0,<1.81.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-geoquery >=2.66.0,<2.67.0

• bioconductor-hdf5array >=1.26.0,<1.27.0

• bioconductor-illuminaio >=0.40.0,<0.41.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-preprocesscore >=1.60.0,<1.61.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-siggenes >=1.72.0,<1.73.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-beanplot

• r-data.table

• r-lattice

• r-mass

• r-mclust

• r-nlme

• r-nor1mix

• r-quadprog

• r-rcolorbrewer

• r-reshape

Required By:

• bioconductor-illuminahumanmethylationepicanno.ilm10b3.hg19

• bioconductor-dmrcate

• bioconductor-champ

• bioconductor-epimutacions

• bioconductor-methylcc

• bioconductor-minfidataepic

• bioconductor-methylclock

• bioconductor-remp

• bioconductor-flowsorted.blood.epic

• bioconductor-meat

• bioconductor-beadsorted.saliva.epic

• bioconductor-flowsorted.blood.450k

• bioconductor-shinyepico

• bioconductor-methylumi

• bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19

• bioconductor-illuminahumanmethylation27kmanifest

• bioconductor-flowsorted.cordbloodnorway.450k

• bioconductor-methylaid

• bioconductor-illuminahumanmethylationepicmanifest

• bioconductor-funtoonorm

• bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19

• bioconductor-skewr

• bioconductor-illuminahumanmethylation450kmanifest

• bioconductor-minfidata

• bioconductor-enmix

• bioconductor-shinymethyl

• bioconductor-flowsorted.dlpfc.450k

• bioconductor-flowsorted.cordblood.450k

• bioconductor-flowsorted.cordbloodcombined.450k

• bioconductor-recountmethylation

• bioconductor-illuminahumanmethylation27kanno.ilmn12.hg19

• bioconductor-illuminahumanmethylationepicanno.ilm10b4.hg19

• bioconductor-missmethyl

• bioconductor-bigmelon

• bioconductor-quantro

• bioconductor-meal

• bioconductor-conumee

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-minfi

and update with:

conda update bioconductor-minfi

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-minfi:<tag>

(see bioconductor-minfi/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-minfi/README.html)