recipe bioconductor-mirsm

Inferring miRNA sponge modules by integrating expression data and miRNA-target binding information

Homepage

https://bioconductor.org/packages/3.11/bioc/html/miRSM.html

License

GPL-3

Recipe

/bioconductor-mirsm/meta.yaml

The package aims to identify miRNA sponge modules by integrating expression data and miRNA-target binding information. It provides several functions to study miRNA sponge modules, including popular methods for inferring gene modules (candidate miRNA sponge modules), and a function to identify miRNA sponge modules, as well as several functions to conduct modular analysis of miRNA sponge modules.

package bioconductor-mirsm

Versions

1.4.0-0,  1.2.0-1

Depends

• bioconductor-bicare >=1.44.0,<1.45.0

• bioconductor-biobase >=2.46.0,<2.47.0

• bioconductor-fabia >=2.32.0,<2.33.0

• bioconductor-gseabase >=1.48.0,<1.49.0

• bioconductor-ibbig >=1.30.0,<1.31.0

• bioconductor-mirsponger >=1.12.0,<1.13.0

• bioconductor-org.hs.eg.db >=3.10.0,<3.11.0

• bioconductor-rqubic >=1.32.0,<1.33.0

• bioconductor-runibic >=1.8.0,<1.9.0

• bioconductor-summarizedexperiment >=1.16.0,<1.17.0

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• r-base >=3.6,<3.7.0a0

• r-bibitr

• r-biclust

• r-dbscan

• r-dynamictreecut

• r-flashclust

• r-gfa

• r-igraph

• r-isa2

• r-linkcomm

• r-mcl

• r-mclust

• r-nmf

• r-pma

• r-ppclust

• r-rcpp

• r-s4vd

• r-sombrero

• r-subspace

• r-wgcna

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-mirsm

and update with:

conda update bioconductor-mirsm

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mirsm:<tag>

(see bioconductor-mirsm/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-mirsm/README.html)