recipe bioconductor-mpranalyze

MPRAnalyze provides statistical framework for the analysis of data generated by Massively Parallel Reporter Assays (MPRAs), used to directly measure enhancer activity. MPRAnalyze can be used for quantification of enhancer activity, classification of active enhancers and comparative analyses of enhancer activity between conditions. MPRAnalyze construct a nested pair of generalized linear models (GLMs) to relate the DNA and RNA observations, easily adjustable to various experimental designs and conditions, and provides a set of rigorous statistical testig schemes.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/MPRAnalyze.html

License

GPL-3

Recipe

/bioconductor-mpranalyze/meta.yaml

package bioconductor-mpranalyze

(downloads) docker_bioconductor-mpranalyze

Versions

1.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-mpranalyze

and update with:

conda update bioconductor-mpranalyze

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mpranalyze:<tag>

(see bioconductor-mpranalyze/tags for valid values for <tag>)