recipe bioconductor-prince

Predicting Interactomes from Co-Elution

Homepage

https://bioconductor.org/packages/3.14/bioc/html/PrInCE.html

License

GPL-3 + file LICENSE

Recipe

/bioconductor-prince/meta.yaml

PrInCE (Predicting Interactomes from Co-Elution) uses a naive Bayes classifier trained on dataset-derived features to recover protein-protein interactions from co-elution chromatogram profiles. This package contains the R implementation of PrInCE.

package bioconductor-prince

Versions

1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-1

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-msnbase >=2.20.0,<2.21.0

• r-base >=4.1,<4.2.0a0

• r-dplyr >=0.7.4

• r-forecast >=8.2

• r-hmisc >=4.0

• r-liblinear >=2.10-8

• r-magrittr >=1.5

• r-naivebayes >=0.9.1

• r-progress >=1.1.2

• r-purrr >=0.2.4

• r-ranger >=0.8.0

• r-rdpack >=0.7

• r-robustbase >=0.92-7

• r-speedglm >=0.3-2

• r-tester >=0.1.7

• r-tidyr >=0.8.99

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-prince

and update with:

conda update bioconductor-prince

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-prince:<tag>

(see bioconductor-prince/tags for valid values for <tag>)

Download stats

Link to this page

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