recipe bioconductor-rcellminer

rcellminer: Molecular Profiles, Drug Response, and Chemical Structures for the NCI-60 Cell Lines

Homepage

https://bioconductor.org/packages/3.11/bioc/html/rcellminer.html

License

LGPL-3 + file LICENSE

Recipe

/bioconductor-rcellminer/meta.yaml

The NCI-60 cancer cell line panel has been used over the course of several decades as an anti-cancer drug screen. This panel was developed as part of the Developmental Therapeutics Program (DTP, http://dtp.nci.nih.gov/) of the U.S. National Cancer Institute (NCI). Thousands of compounds have been tested on the NCI-60, which have been extensively characterized by many platforms for gene and protein expression, copy number, mutation, and others (Reinhold, et al., 2012). The purpose of the CellMiner project (http://discover.nci.nih.gov/ cellminer) has been to integrate data from multiple platforms used to analyze the NCI-60 and to provide a powerful suite of tools for exploration of NCI-60 data.

package bioconductor-rcellminer

Versions

2.10.0-0,  2.8.0-1,  2.6.0-1,  2.4.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-rcellminerdata >=2.10.0,<2.11.0

• r-base >=4.0,<4.1.0a0

• r-ggplot2

• r-gplots

• r-shiny

• r-stringr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rcellminer

and update with:

conda update bioconductor-rcellminer

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rcellminer:<tag>

(see bioconductor-rcellminer/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rcellminer/README.html)