recipe bioconductor-reactomepa

This package provides functions for pathway analysis based on REACTOME pathway database. It implements enrichment analysis, gene set enrichment analysis and several functions for visualization.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/ReactomePA.html

License

GPL-2

Recipe

/bioconductor-reactomepa/meta.yaml

Links

biotools: reactomepa

package bioconductor-reactomepa

(downloads) docker_bioconductor-reactomepa

Versions

1.26.0-0, 1.24.0-0, 1.22.0-0

Depends bioconductor-annotationdbi

>=1.44.0,<1.45.0

Depends bioconductor-dose

>=3.8.0,<3.9.0

Depends bioconductor-enrichplot

>=1.2.0,<1.3.0

Depends bioconductor-graphite

>=1.28.0,<1.29.0

Depends bioconductor-reactome.db

>=1.66.0,<1.67.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-ggplot2

Depends r-ggraph

Depends r-igraph

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-reactomepa

and update with:

conda update bioconductor-reactomepa

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-reactomepa:<tag>

(see bioconductor-reactomepa/tags for valid values for <tag>)