- recipe bioconductor-regionreport
Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR results
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/regionReport.html
- License:
Artistic-2.0
- Recipe:
Generate HTML or PDF reports to explore a set of regions such as the results from annotation-agnostic expression analysis of RNA-seq data at base-pair resolution performed by derfinder. You can also create reports for DESeq2 or edgeR results.
- package bioconductor-regionreport¶
-
- Versions:
1.32.0-0
,1.27.1-0
,1.26.0-0
,1.24.2-0
,1.24.0-0
,1.22.0-0
,1.20.0-0
,1.18.2-0
,1.16.1-0
- Depends:
bioconductor-biocstyle
>=2.26.0,<2.27.0
bioconductor-deformats
>=1.26.0,<1.27.0
bioconductor-derfinder
>=1.32.0,<1.33.0
bioconductor-deseq2
>=1.38.0,<1.39.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
r-knitr
>=1.6
r-knitrbootstrap
>=0.9.0
r-rmarkdown
>=0.9.5
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-regionreport
and update with:
conda update bioconductor-regionreport
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-regionreport:<tag>
(see bioconductor-regionreport/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-regionreport/README.html)