recipe bioconductor-rhtslib

HTSlib high-throughput sequencing library as an R package

Homepage

https://bioconductor.org/packages/3.10/bioc/html/Rhtslib.html

License

LGPL (>= 2)

Recipe

/bioconductor-rhtslib/meta.yaml

Links

biotools: rhtslib, doi: 10.1038/nmeth.3252

This package provides version 1.7 of the ‘HTSlib’ C library for high-throughput sequence analysis. The package is primarily useful to developers of other R packages who wish to make use of HTSlib. Motivation and instructions for use of this package are in the vignette, vignette(package=”Rhtslib”, “Rhtslib”).

package bioconductor-rhtslib

Versions

1.18.0-1, 1.16.1-1, 1.16.1-0, 1.14.1-0, 1.14.0-0, 1.12.1-0, 1.10.0-0, 1.8.0-0, 1.6.0-1, 1.6.0-0

Depends

• bioconductor-zlibbioc >=1.32.0,<1.33.0

• bzip2 >=1.0.8,<2.0a0

• libcurl >=7.64.1,<8.0a0

• libgcc-ng >=7.3.0

• r-base >=3.6,<3.7.0a0

• xz >=5.2.4,<5.3.0a0

Required By

• bioconductor-deepsnv

• bioconductor-bitseq

• bioconductor-scpipe

• bioconductor-h5vc

• bioconductor-transview

• bioconductor-podkat

• bioconductor-variantannotation

• bioconductor-csaw

• bioconductor-quasr

• bioconductor-diffbind

• bioconductor-diffhic

• bioconductor-qrqc

• bioconductor-seqbias

• bioconductor-methylkit

• bioconductor-bamsignals

• bioconductor-arrayexpresshts

• bioconductor-rsamtools

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rhtslib

and update with:

conda update bioconductor-rhtslib

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rhtslib:<tag>

(see bioconductor-rhtslib/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rhtslib/README.html)