recipe bioconductor-risa

Converting experimental metadata from ISA-tab into Bioconductor data structures

Homepage

https://bioconductor.org/packages/3.10/bioc/html/Risa.html

License

LGPL

Recipe

/bioconductor-risa/meta.yaml

Links

biotools: risa

The Investigation / Study / Assay (ISA) tab-delimited format is a general purpose framework with which to collect and communicate complex metadata (i.e. sample characteristics, technologies used, type of measurements made) from experiments employing a combination of technologies, spanning from traditional approaches to high-throughput techniques. Risa allows to access metadata/data in ISA-Tab format and build Bioconductor data structures. Currently, data generated from microarray, flow cytometry and metabolomics-based (i.e. mass spectrometry) assays are supported. The package is extendable and efforts are undergoing to support metadata associated to proteomics assays.

package bioconductor-risa

(downloads) docker_bioconductor-risa

Versions

1.28.0-0, 1.26.0-1, 1.24.0-0, 1.20.0-0, 1.18.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-risa

and update with:

conda update bioconductor-risa

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-risa:<tag>

(see bioconductor-risa/tags for valid values for <tag>)