recipe bioconductor-risa

Converting experimental metadata from ISA-tab into Bioconductor data structures

Homepage

https://bioconductor.org/packages/3.10/bioc/html/Risa.html

License

LGPL

Recipe

/bioconductor-risa/meta.yaml

Links

biotools: risa

The Investigation / Study / Assay (ISA) tab-delimited format is a general purpose framework with which to collect and communicate complex metadata (i.e. sample characteristics, technologies used, type of measurements made) from experiments employing a combination of technologies, spanning from traditional approaches to high-throughput techniques. Risa allows to access metadata/data in ISA-Tab format and build Bioconductor data structures. Currently, data generated from microarray, flow cytometry and metabolomics-based (i.e. mass spectrometry) assays are supported. The package is extendable and efforts are undergoing to support metadata associated to proteomics assays.

package bioconductor-risa

Versions

1.28.0-0, 1.26.0-1, 1.24.0-0, 1.20.0-0, 1.18.0-0

Depends

• bioconductor-affy >=1.64.0,<1.65.0

• bioconductor-biobase >=2.46.0,<2.47.0

• bioconductor-biocviews >=1.54.0,<1.55.0

• bioconductor-xcms >=3.8.0,<3.9.0

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• r-base >=3.6,<3.7.0a0

• r-rcpp >=0.9.13

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-risa

and update with:

conda update bioconductor-risa

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-risa:<tag>

(see bioconductor-risa/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-risa/README.html)