recipe bioconductor-risa

Converting experimental metadata from ISA-tab into Bioconductor data structures

Homepage

https://bioconductor.org/packages/3.14/bioc/html/Risa.html

License

LGPL

Recipe

/bioconductor-risa/meta.yaml

Links

biotools: risa

The Investigation / Study / Assay (ISA) tab-delimited format is a general purpose framework with which to collect and communicate complex metadata (i.e. sample characteristics, technologies used, type of measurements made) from experiments employing a combination of technologies, spanning from traditional approaches to high-throughput techniques. Risa allows to access metadata/data in ISA-Tab format and build Bioconductor data structures. Currently, data generated from microarray, flow cytometry and metabolomics-based (i.e. mass spectrometry) assays are supported. The package is extendable and efforts are undergoing to support metadata associated to proteomics assays.

package bioconductor-risa

Versions

1.36.0-1,  1.36.0-0,  1.34.0-0,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.24.0-0, 

1.36.0-1,  1.36.0-0,  1.34.0-0,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.24.0-0,  1.20.0-0,  1.18.0-0

Depends

• bioconductor-affy >=1.72.0,<1.73.0

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biocviews >=1.62.0,<1.63.0

• bioconductor-xcms >=3.16.0,<3.17.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=10.3.0

• liblapack >=3.8.0,<4.0a0

• libstdcxx-ng >=10.3.0

• r-base >=4.1,<4.2.0a0

• r-rcpp >=0.9.13

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-risa

and update with:

conda update bioconductor-risa

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-risa:<tag>

(see bioconductor-risa/tags for valid values for <tag>)

Download stats

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