recipe bioconductor-ritan

Rapid Integration of Term Annotation and Network resources

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/RITAN.html

License:

file LICENSE

Recipe:

/bioconductor-ritan/meta.yaml

Tools for comprehensive gene set enrichment and extraction of multi-resource high confidence subnetworks. RITAN facilitates bioinformatic tasks for enabling network biology research.

package bioconductor-ritan

Versions:

1.22.0-0,  1.17.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.0-1,  1.6.0-1, 

1.22.0-0,  1.17.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.0-1,  1.6.0-1,  1.6.0-0

Depends:

• bioconductor-annotationfilter >=1.22.0,<1.23.0

• bioconductor-bgeedb >=2.24.0,<2.25.0

• bioconductor-ensdb.hsapiens.v86 >=2.99.0,<2.100.0

• bioconductor-ensembldb >=2.22.0,<2.23.0

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-ritandata >=1.22.0,<1.23.0

• bioconductor-stringdb >=2.10.0,<2.11.0

• r-base >=4.2,<4.3.0a0

• r-dynamictreecut

• r-ggplot2

• r-gplots

• r-gridextra

• r-gsubfn

• r-hash

• r-igraph

• r-knitr

• r-linkcomm

• r-mcl

• r-plotrix

• r-png

• r-rcolorbrewer

• r-reshape2

• r-sqldf

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-ritan

and update with:

conda update bioconductor-ritan

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ritan:<tag>

(see bioconductor-ritan/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ritan/README.html)