recipe bioconductor-safe

Significance Analysis of Function and Expression

Homepage

https://bioconductor.org/packages/3.14/bioc/html/safe.html

License

GPL (>= 2)

Recipe

/bioconductor-safe/meta.yaml

Links

biotools: safe, doi: 10.1093/bioinformatics/bti260

SAFE is a resampling-based method for testing functional categories in gene expression experiments. SAFE can be applied to 2-sample and multi-class comparisons, or simple linear regressions. Other experimental designs can also be accommodated through user-defined functions.

package bioconductor-safe

Versions

3.34.0-0,  3.32.0-0,  3.30.0-1,  3.30.0-0,  3.27.0-0,  3.26.0-0,  3.24.0-1,  3.22.0-0,  3.20.0-0, 

3.34.0-0,  3.32.0-0,  3.30.0-1,  3.30.0-0,  3.27.0-0,  3.26.0-0,  3.24.0-1,  3.22.0-0,  3.20.0-0,  3.18.0-0,  3.16.0-0

Depends

• bioconductor-annotationdbi >=1.56.0,<1.57.0

• bioconductor-biobase >=2.54.0,<2.55.0

• r-base >=4.1,<4.2.0a0

• r-sparsem

Required By

• bioconductor-egsea

• bioconductor-enrichmentbrowser

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-safe

and update with:

conda update bioconductor-safe

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-safe:<tag>

(see bioconductor-safe/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-safe/README.html)