recipe bioconductor-sctensor

Detection of cell-cell interaction from single-cell RNA-seq dataset by tensor decomposition

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/scTensor.html

License:

Artistic-2.0

Recipe:

/bioconductor-sctensor/meta.yaml

The algorithm is based on the non-negative tucker decomposition (NTD2) of nnTensor.

package bioconductor-sctensor

Versions:

2.4.0-0,  2.2.0-0,  2.0.0-1,  2.0.0-0,  1.4.0-0,  1.2.0-0,  1.0.12-0

Depends:

• bioconductor-annotationdbi >=1.56.0,<1.57.0

• bioconductor-annotationhub >=3.2.0,<3.3.0

• bioconductor-biocstyle >=2.22.0,<2.23.0

• bioconductor-category >=2.60.0,<2.61.0

• bioconductor-dose >=3.20.0,<3.21.0

• bioconductor-gostats >=2.60.0,<2.61.0

• bioconductor-meshdbi >=1.30.0,<1.31.0

• bioconductor-meshr >=2.0.0,<2.1.0

• bioconductor-reactome.db >=1.77.0,<1.78.0

• bioconductor-reactomepa >=1.38.0,<1.39.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-schex >=1.8.0,<1.9.0

• bioconductor-singlecellexperiment >=1.16.0,<1.17.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• r-abind

• r-base >=4.1,<4.2.0a0

• r-biocmanager

• r-cctensor >=1.0.2

• r-checkmate

• r-crayon

• r-ggplot2

• r-heatmaply

• r-igraph

• r-knitr

• r-nntensor >=1.1.5

• r-outliers

• r-plotly

• r-plotrix

• r-rmarkdown

• r-rsqlite

• r-rtensor >=1.4.8

• r-tagcloud

• r-visnetwork

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-sctensor

and update with:

conda update bioconductor-sctensor

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-sctensor:<tag>

(see bioconductor-sctensor/tags for valid values for <tag>)

Download stats

Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-sctensor/README.html)