recipe bioconductor-scuttle

Single-Cell RNA-Seq Analysis Utilities

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/scuttle.html

License:

GPL-3

Recipe:

/bioconductor-scuttle/meta.yaml

Provides basic utility functions for performing single-cell analyses, focusing on simple normalization, quality control and data transformations. Also provides some helper functions to assist development of other packages.

package bioconductor-scuttle

Versions:

1.8.0-0,  1.4.0-2,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.4-0,  1.0.0-0

Depends:

• bioconductor-beachmat >=2.14.0,<2.15.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-delayedarray >=0.24.0,<0.25.0

• bioconductor-delayedmatrixstats >=1.20.0,<1.21.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-singlecellexperiment >=1.20.0,<1.21.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-matrix

• r-rcpp

Required By:

• bioconductor-spatiallibd

• bioconductor-singlecelltk

• bioconductor-scdblfinder

• bioconductor-muscat

• bioconductor-imcrtools

• bioconductor-dropletutils

• bioconductor-mumosa

• bioconductor-spatialheatmap

• bioconductor-basics

• bioconductor-velociraptor

• bioconductor-scater

• r-acidsinglecell

• bioconductor-basicstan

• bioconductor-scran

• bioconductor-mia

• bioconductor-batchelor

• bioconductor-flames

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-scuttle

and update with:

conda update bioconductor-scuttle

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scuttle:<tag>

(see bioconductor-scuttle/tags for valid values for <tag>)

Download stats

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