- recipe bioconductor-scuttle
Single-Cell RNA-Seq Analysis Utilities
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/scuttle.html
- License:
GPL-3
- Recipe:
Provides basic utility functions for performing single-cell analyses, focusing on simple normalization, quality control and data transformations. Also provides some helper functions to assist development of other packages.
- package bioconductor-scuttle¶
-
- Versions:
1.8.0-0
,1.4.0-2
,1.4.0-1
,1.4.0-0
,1.2.0-0
,1.0.4-0
,1.0.0-0
- Depends:
bioconductor-beachmat
>=2.14.0,<2.15.0
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-delayedarray
>=0.24.0,<0.25.0
bioconductor-delayedmatrixstats
>=1.20.0,<1.21.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-singlecellexperiment
>=1.20.0,<1.21.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
libstdcxx-ng
>=12
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-scuttle
and update with:
conda update bioconductor-scuttle
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-scuttle:<tag>
(see bioconductor-scuttle/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-scuttle/README.html)