recipe bioconductor-signaturesearch

Environment for Gene Expression Searching Combined with Functional Enrichment Analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/signatureSearch.html

License:

Artistic-2.0

Recipe:

/bioconductor-signaturesearch/meta.yaml

This package implements algorithms and data structures for performing gene expression signature (GES) searches, and subsequently interpreting the results functionally with specialized enrichment methods.

package bioconductor-signaturesearch

Versions:

1.12.0-0,  1.8.2-1,  1.8.2-0,  1.8.0-0,  1.6.1-0,  1.4.3-0,  1.4.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-clusterprofiler >=4.6.0,<4.7.0

• bioconductor-delayedarray >=0.24.0,<0.25.0

• bioconductor-dose >=3.24.0,<3.25.0

• bioconductor-experimenthub >=2.6.0,<2.7.0

• bioconductor-fgsea >=1.24.0,<1.25.0

• bioconductor-gseabase >=1.60.0,<1.61.0

• bioconductor-hdf5array >=1.26.0,<1.27.0

• bioconductor-org.hs.eg.db >=3.16.0,<3.17.0

• bioconductor-qvalue >=2.30.0,<2.31.0

• bioconductor-reactome.db >=1.82.0,<1.83.0

• bioconductor-rhdf5 >=2.42.0,<2.43.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-dplyr

• r-fastmatch

• r-ggplot2

• r-magrittr

• r-matrix

• r-rcpp

• r-readr

• r-reshape2

• r-rsqlite

• r-scales

• r-tibble

• r-visnetwork

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-signaturesearch

and update with:

conda update bioconductor-signaturesearch

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-signaturesearch:<tag>

(see bioconductor-signaturesearch/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-signaturesearch/README.html)