- recipe bioconductor-signaturesearch
Environment for Gene Expression Searching Combined with Functional Enrichment Analysis
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/signatureSearch.html
- License
Artistic-2.0
- Recipe
This package implements algorithms and data structures for performing gene expression signature (GES) searches, and subsequently interpreting the results functionally with specialized enrichment methods.
- package bioconductor-signaturesearch¶
-
- Versions
1.8.2-0
,1.8.0-0
,1.6.1-0
,1.4.3-0
,1.4.0-0
,1.2.0-0
,1.0.0-0
- Depends
bioconductor-annotationdbi
>=1.56.0,<1.57.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-clusterprofiler
>=4.2.0,<4.3.0
bioconductor-delayedarray
>=0.20.0,<0.21.0
bioconductor-dose
>=3.20.0,<3.21.0
bioconductor-experimenthub
>=2.2.0,<2.3.0
bioconductor-fgsea
>=1.20.0,<1.21.0
bioconductor-gseabase
>=1.56.0,<1.57.0
bioconductor-hdf5array
>=1.22.0,<1.23.0
bioconductor-qvalue
>=2.26.0,<2.27.0
bioconductor-reactome.db
>=1.77.0,<1.78.0
bioconductor-rhdf5
>=2.38.0,<2.39.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
libstdcxx-ng
>=10.3.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-signaturesearch
and update with:
conda update bioconductor-signaturesearch
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-signaturesearch:<tag>
(see bioconductor-signaturesearch/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-signaturesearch/README.html)