recipe bioconductor-tabulamurissenisdata

Bulk and single-cell RNA-seq data from the Tabula Muris Senis project

Homepage

https://bioconductor.org/packages/3.14/data/experiment/html/TabulaMurisSenisData.html

License

MIT + file LICENSE

Recipe

/bioconductor-tabulamurissenisdata/meta.yaml

This package provides access to RNA-seq data generated by the Tabula Muris Senis project via the Bioconductor project. The data is made available without restrictions by the Chan Zuckerberg Biohub. It is provided here without further processing, collected in the form of SingleCellExperiment objects.

package bioconductor-tabulamurissenisdata

Versions

1.0.0-0

Depends

• bioconductor-annotationhub >=3.2.0,<3.3.0

• bioconductor-experimenthub >=2.2.0,<2.3.0

• bioconductor-hdf5array >=1.22.0,<1.23.0

• bioconductor-singlecellexperiment >=1.16.0,<1.17.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• curl >=7.79.1,<8.0a0

• r-base >=4.1,<4.2.0a0

• r-gdata

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-tabulamurissenisdata

and update with:

conda update bioconductor-tabulamurissenisdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tabulamurissenisdata:<tag>

(see bioconductor-tabulamurissenisdata/tags for valid values for <tag>)

Download stats

Link to this page

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