recipe bioconductor-tigre

Transcription factor Inference through Gaussian process Reconstruction of Expression

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/tigre.html

License:

AGPL-3

Recipe:

/bioconductor-tigre/meta.yaml

Links:

biotools: tigre

The tigre package implements our methodology of Gaussian process differential equation models for analysis of gene expression time series from single input motif networks. The package can be used for inferring unobserved transcription factor (TF) protein concentrations from expression measurements of known target genes, or for ranking candidate targets of a TF.

package bioconductor-tigre

Versions:

1.52.0-0,  1.48.0-2,  1.48.0-1,  1.48.0-0,  1.46.0-0,  1.44.0-1,  1.44.0-0,  1.42.0-0,  1.40.0-0, 

1.52.0-0,  1.48.0-2,  1.48.0-1,  1.48.0-0,  1.46.0-0,  1.44.0-1,  1.44.0-0,  1.42.0-0,  1.40.0-0,  1.38.0-1,  1.36.0-0,  1.34.0-0,  1.32.0-0,  1.30.0-0

Depends:

• bioconductor-annotate >=1.76.0,<1.77.0

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• r-base >=4.2,<4.3.0a0

• r-dbi

• r-gplots

• r-rsqlite

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-tigre

and update with:

conda update bioconductor-tigre

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tigre:<tag>

(see bioconductor-tigre/tags for valid values for <tag>)

Download stats

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