recipe bioconductor-tigre

Transcription factor Inference through Gaussian process Reconstruction of Expression

Homepage

https://bioconductor.org/packages/3.10/bioc/html/tigre.html

License

AGPL-3

Recipe

/bioconductor-tigre/meta.yaml

Links

biotools: tigre

The tigre package implements our methodology of Gaussian process differential equation models for analysis of gene expression time series from single input motif networks. The package can be used for inferring unobserved transcription factor (TF) protein concentrations from expression measurements of known target genes, or for ranking candidate targets of a TF.

package bioconductor-tigre

Versions

1.40.0-0, 1.38.0-1, 1.36.0-0, 1.34.0-0, 1.32.0-0, 1.30.0-0

Depends

• bioconductor-annotate >=1.64.0,<1.65.0

• bioconductor-annotationdbi >=1.48.0,<1.49.0

• bioconductor-biobase >=2.46.0,<2.47.0

• bioconductor-biocgenerics >=0.32.0,<0.33.0

• libgcc-ng >=7.3.0

• r-base >=3.6,<3.7.0a0

• r-dbi

• r-gplots

• r-rsqlite

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-tigre

and update with:

conda update bioconductor-tigre

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tigre:<tag>

(see bioconductor-tigre/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-tigre/README.html)