- recipe bioconductor-tximeta
Transcript Quantification Import with Automatic Metadata
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/tximeta.html
- License:
GPL-2
- Recipe:
Transcript quantification import from Salmon and alevin with automatic attachment of transcript ranges and release information, and other associated metadata. De novo transcriptomes can be linked to the appropriate sources with linkedTxomes and shared for computational reproducibility.
- package bioconductor-tximeta¶
-
- Versions:
1.16.0-0
,1.14.0-0
,1.12.0-0
,1.10.0-0
,1.8.4-0
,1.8.0-0
,1.6.3-0
,1.6.2-0
,1.4.3-0
,1.16.0-0
,1.14.0-0
,1.12.0-0
,1.10.0-0
,1.8.4-0
,1.8.0-0
,1.6.3-0
,1.6.2-0
,1.4.3-0
,1.4.0-0
,1.2.2-0
,1.0.3-0
,1.0.1-0
- Depends:
bioconductor-annotationdbi
>=1.60.0,<1.61.0
bioconductor-annotationhub
>=3.6.0,<3.7.0
bioconductor-biocfilecache
>=2.6.0,<2.7.0
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-ensembldb
>=2.22.0,<2.23.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicfeatures
>=1.50.0,<1.51.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
bioconductor-tximport
>=1.26.0,<1.27.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-tximeta
and update with:
conda update bioconductor-tximeta
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-tximeta:<tag>
(see bioconductor-tximeta/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-tximeta/README.html)