Package Recipe 'bioconductor-variantannotation'

recipe bioconductor-variantannotation¶

Annotate variants, compute amino acid coding changes, predict coding outcomes.

Homepage: https://bioconductor.org/packages/3.9/bioc/html/VariantAnnotation.html
License: Artistic-2.0
Recipe: /bioconductor-variantannotation/meta.yaml
Links: biotools: variantannotation

package bioconductor-variantannotation¶

Versions

1.28.3-0, 1.26.1-0, 1.24.1-0, 1.22.3-0, 1.20.3-0, 1.18.7-0, 1.16.4-0, 1.16.3-0, 1.16.1-0, 1.16.0-0

Depends

bioconductor-annotationdbi >=1.44.0,<1.45.0
bioconductor-biobase >=2.42.0,<2.43.0
bioconductor-biocgenerics >=0.28.0,<0.29.0
bioconductor-biostrings >=2.50.0,<2.51.0
bioconductor-bsgenome >=1.50.0,<1.51.0
bioconductor-genomeinfodb >=1.18.0,<1.19.0
bioconductor-genomicfeatures >=1.34.0,<1.35.0
bioconductor-genomicranges >=1.34.0,<1.35.0
bioconductor-iranges >=2.16.0,<2.17.0
bioconductor-rsamtools >=1.34.0,<1.35.0
bioconductor-rtracklayer >=1.42.0,<1.43.0
bioconductor-s4vectors >=0.20.0,<0.21.0
bioconductor-summarizedexperiment >=1.12.0,<1.13.0
bioconductor-xvector >=0.22.0,<0.23.0
bioconductor-zlibbioc >=1.28.0,<1.29.0
libgcc-ng >=7.3.0
r-base >=3.5.1,<3.5.2.0a0
r-dbi

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-variantannotation

and update with:

conda update bioconductor-variantannotation

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-variantannotation:<tag>

(see bioconductor-variantannotation/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-variantannotation/README.html)