- recipe bioconductor-variantannotation
Annotation of Genetic Variants
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/VariantAnnotation.html
- License:
Artistic-2.0
- Recipe:
- Links:
biotools: variantannotation
Annotate variants, compute amino acid coding changes, predict coding outcomes.
- package bioconductor-variantannotation¶
-
- Versions:
1.44.0-1
,1.44.0-0
,1.40.0-2
,1.40.0-1
,1.40.0-0
,1.38.0-0
,1.36.0-1
,1.36.0-0
,1.34.0-0
,1.44.0-1
,1.44.0-0
,1.40.0-2
,1.40.0-1
,1.40.0-0
,1.38.0-0
,1.36.0-1
,1.36.0-0
,1.34.0-0
,1.32.0-0
,1.30.1-0
,1.30.0-0
,1.28.3-0
,1.26.1-0
,1.24.1-0
,1.22.3-0
,1.20.3-0
,1.18.7-0
,1.16.4-0
,1.16.3-0
,1.16.1-0
,1.16.0-0
- Depends:
bioconductor-annotationdbi
>=1.60.0,<1.61.0
bioconductor-biobase
>=2.58.0,<2.59.0
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-bsgenome
>=1.66.0,<1.67.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicfeatures
>=1.50.0,<1.51.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-matrixgenerics
>=1.10.0,<1.11.0
bioconductor-rhtslib
>=2.0.0,<2.1.0
bioconductor-rsamtools
>=2.14.0,<2.15.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
bioconductor-xvector
>=0.38.0,<0.39.0
bioconductor-zlibbioc
>=1.44.0,<1.45.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-variantannotation
and update with:
conda update bioconductor-variantannotation
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-variantannotation:<tag>
(see bioconductor-variantannotation/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-variantannotation/README.html)