recipe bioconductor-variantannotation

Annotation of Genetic Variants

Homepage

https://bioconductor.org/packages/3.13/bioc/html/VariantAnnotation.html

License

Artistic-2.0

Recipe

/bioconductor-variantannotation/meta.yaml

Links

biotools: variantannotation

Annotate variants, compute amino acid coding changes, predict coding outcomes.

package bioconductor-variantannotation

Versions

1.38.0-0,  1.36.0-1,  1.36.0-0,  1.34.0-0,  1.32.0-0,  1.30.1-0,  1.30.0-0,  1.28.3-0,  1.26.1-0, 

1.38.0-0,  1.36.0-1,  1.36.0-0,  1.34.0-0,  1.32.0-0,  1.30.1-0,  1.30.0-0,  1.28.3-0,  1.26.1-0,  1.24.1-0,  1.22.3-0,  1.20.3-0,  1.18.7-0,  1.16.4-0,  1.16.3-0,  1.16.1-0,  1.16.0-0

Depends

• bioconductor-annotationdbi >=1.54.0,<1.55.0

• bioconductor-biobase >=2.52.0,<2.53.0

• bioconductor-biocgenerics >=0.38.0,<0.39.0

• bioconductor-biostrings >=2.60.0,<2.61.0

• bioconductor-bsgenome >=1.60.0,<1.61.0

• bioconductor-genomeinfodb >=1.28.0,<1.29.0

• bioconductor-genomicfeatures >=1.44.0,<1.45.0

• bioconductor-genomicranges >=1.44.0,<1.45.0

• bioconductor-iranges >=2.26.0,<2.27.0

• bioconductor-matrixgenerics >=1.4.0,<1.5.0

• bioconductor-rhtslib >=1.24.0,<1.25.0

• bioconductor-rsamtools >=2.8.0,<2.9.0

• bioconductor-rtracklayer >=1.52.0,<1.53.0

• bioconductor-s4vectors >=0.30.0,<0.31.0

• bioconductor-summarizedexperiment >=1.22.0,<1.23.0

• bioconductor-xvector >=0.32.0,<0.33.0

• bioconductor-zlibbioc >=1.38.0,<1.39.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=9.3.0

• liblapack >=3.8.0,<4.0a0

• r-base >=4.1,<4.2.0a0

• r-dbi

Required By

• hmftools-purple

• bioconductor-genomicfiles

• bioconductor-seqcat

• bioconductor-somaticsignatures

• bioconductor-copynumberplots

• bioconductor-damefinder

• bioconductor-decomptumor2sig

• bioconductor-gwascat

• bioconductor-variantfiltering

• bioconductor-cnvrd2

• bioconductor-polyphen.hsapiens.dbsnp131

• bioconductor-biscuiteer

• bioconductor-motifbreakr

• bioconductor-musicatk

• bioconductor-r453plus1toolbox

• bioconductor-titancna

• bioconductor-igvr

• hmftools-sage

• bioconductor-bbcanalyzer

• bioconductor-madseq

• bioconductor-fcscan

• bioconductor-vcfarray

• bioconductor-appreci8r

• bioconductor-htseqgenie

• bioconductor-apalyzer

• bioconductor-rarevariantvis

• bioconductor-ensemblvep

• bioconductor-sift.hsapiens.dbsnp137

• bioconductor-purecn

• bioconductor-genvisr

• bioconductor-cnvfilter

• bioconductor-icetea

• bioconductor-customprodb

• bioconductor-cosmic.67

• bioconductor-genbankr

• bioconductor-gwasurvivr

• bioconductor-xcir

• bioconductor-allelicimbalance

• bioconductor-scoreinvhap

• bioconductor-sigspack

• bioconductor-ldblock

• bioconductor-structuralvariantannotation

• bioconductor-yapsa

• bioconductor-badregionfinder

• bioconductor-cgdv17

• drop

• bioconductor-karyoploter

• bioconductor-methyanalysis

• bioconductor-ga4ghclient

• bioconductor-gmapr

• bioconductor-uniquorn

• bioconductor-helloranges

• r-nanopore

• bioconductor-mmappr2

• bioconductor-varianttoolsdata

• bioconductor-systempiper

• bioconductor-tvtb

• bioconductor-tloh

• bioconductor-mutationalpatterns

• bioconductor-varianttools

• bioconductor-biovizbase

• bioconductor-genotypeeval

• bioconductor-sift.hsapiens.dbsnp132

• bioconductor-signer

• bioconductor-myvariant

• bioconductor-rariant

• bioconductor-snphood

• bioconductor-epialleler

• bioconductor-dominoeffect

• bioconductor-deepsnv

• bioconductor-customprodb

• bioconductor-ggbio

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-variantannotation

and update with:

conda update bioconductor-variantannotation

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-variantannotation:<tag>

(see bioconductor-variantannotation/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-variantannotation/README.html)