recipe bioconductor-waddr

Statistical tests for detecting differential distributions based on the 2-Wasserstein distance

Homepage

https://bioconductor.org/packages/3.14/bioc/html/waddR.html

License

MIT + file LICENSE

Recipe

/bioconductor-waddr/meta.yaml

The package offers statistical tests based on the 2-Wasserstein distance for detecting and characterizing differences between two distributions given in the form of samples. Functions for calculating the 2-Wasserstein distance and testing for differential distributions are provided, as well as a specifically tailored test for differential expression in single-cell RNA sequencing data.

package bioconductor-waddr

Versions

1.8.0-0,  1.6.1-0,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.0-0

Depends

• bioconductor-biocfilecache >=2.2.0,<2.3.0

• bioconductor-biocparallel >=1.28.0,<1.29.0

• bioconductor-singlecellexperiment >=1.16.0,<1.17.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=9.4.0

• liblapack >=3.8.0,<4.0a0

• libstdcxx-ng >=9.4.0

• r-arm >=1.10-1

• r-base >=4.1,<4.2.0a0

• r-eva

• r-rcpp >=1.0.1

• r-rcpparmadillo

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-waddr

and update with:

conda update bioconductor-waddr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-waddr:<tag>

(see bioconductor-waddr/tags for valid values for <tag>)

Download stats

Link to this page

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