recipe bioconvert

convert various bioinformatics formats

Homepage:

http://bioconvert.readthedocs.io/

License:

GPL / GPL3

Recipe:

/bioconvert/meta.yaml

package bioconvert

Versions:

1.0.0.post0-0,  0.6.3-0,  0.6.2-0,  0.6.1-0,  0.6.0-0,  0.5.2-0,  0.4.3-0,  0.4.2-0,  0.4.1-0, 

1.0.0.post0-0,  0.6.3-0,  0.6.2-0,  0.6.1-0,  0.6.0-0,  0.5.2-0,  0.4.3-0,  0.4.2-0,  0.4.1-0,  0.4.0-0,  0.3.0-1,  0.2.0-2,  0.2.0-1,  0.0.10-1,  0.0.10-0

Depends:

• bamtools

• bcftools

• bedops

• bedtools

• biopython >=1.70

• biosniff

• colorlog

• deeptools

• dsrc

• easydev

• gffread

• go 1.10.3

• jinja2 <3.1

• mappy

• matplotlib-base

• mawk

• mosdepth

• networkx

• numpydoc

• openpyxl <=3.0.10

• pandas

• pbzip2

• picard

• pigz

• plink

• py2bit

• pybigwig

• pyexcel

• pyexcel-ods3

• pyexcel-xls

• pyexcel-xlsx

• pysam

• python

• pyyaml

• sambamba

• samtools >=1.9

• sed

• seqkit

• seqtk

• squizz

• sra-tools

• statsmodels

• tqdm

• ucsc-bedgraphtobigwig

• ucsc-bigwigtobedgraph

• ucsc-fatotwobit

• ucsc-twobittofa

• ucsc-wigtobigwig

• wiggletools 1.2.11

• xlrd >2.0

Required By:

• clsify

• haplotype-lso

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconvert

and update with:

conda update bioconvert

or use the docker container:

docker pull quay.io/biocontainers/bioconvert:<tag>

(see bioconvert/tags for valid values for <tag>)

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